genome.fa.s11.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  10  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5008372--5008405	2	17.0	2	100	0	68	0	0	50	50	1.00
5012496--5012526	2	15.5	2	93	0	53	0	51	0	48	1.00
5017094--5017120	6	4.5	6	100	0	54	33	0	51	14	1.43
5021714--5021784	34	2.1	33	81	2	79	26	19	23	29	1.98
5023524--5023640	59	2.0	59	94	0	207	41	23	14	20	1.89
5037536--5037576	2	21.0	2	85	5	57	46	0	4	48	1.23
5043528--5043567	2	20.0	2	94	0	71	47	0	2	50	1.14
5048623--5048676	25	2.1	25	82	6	63	38	1	0	59	1.08
5050632--5050668	17	2.2	17	90	9	58	45	0	0	54	1.00
5064866--5064915	20	2.5	20	75	12	50	48	0	0	52	1.00
5064947--5065007	21	2.9	21	81	16	65	49	1	4	44	1.33
5073421--5073533	30	3.7	31	74	6	99	38	1	4	55	1.30
5073585--5073654	22	3.0	23	76	14	72	48	1	5	44	1.35
5079260--5079310	27	1.9	26	84	4	66	49	7	5	37	1.56
5081356--5081459	55	1.9	55	84	4	138	26	30	7	34	1.85
5085133--5085769	304	2.1	303	88	3	935	34	17	20	26	1.95
5096986--5097014	15	1.9	15	100	0	58	41	6	17	34	1.76
5096987--5097020	15	2.3	15	89	0	50	47	5	11	35	1.65
5097283--5097330	21	2.3	20	82	7	51	29	0	0	70	0.87
5097305--5097418	26	4.2	25	73	19	79	28	1	1	68	1.09
5097248--5097430	19	9.6	19	67	25	70	30	1	1	67	1.04
5106707--5106741	8	4.4	8	100	0	70	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5118697--5118727	7	4.4	7	100	0	62	29	0	41	29	1.56
5119407--5119435	6	4.8	6	100	0	58	82	0	0	17	0.66
5133073--5133104	2	16.0	2	93	0	55	46	0	3	50	1.17
5144240--5144383	61	2.4	60	74	4	146	54	2	9	33	1.45
5153806--5153864	23	2.6	23	83	0	73	25	8	25	40	1.83
5153993--5154052	22	2.7	22	79	5	68	50	13	1	35	1.52
5154391--5154446	29	2.0	29	82	3	69	48	1	10	39	1.49
5154460--5154490	2	15.5	2	100	0	62	48	0	0	51	1.00
5159986--5160044	28	2.1	28	87	6	84	33	11	25	28	1.91
5160382--5160547	81	2.0	81	82	2	199	33	4	24	36	1.77
5160849--5160895	20	2.3	20	85	7	60	46	6	14	31	1.70
5162193--5162239	2	23.5	2	100	0	94	51	0	0	48	1.00
5175244--5175288	23	2.0	23	90	0	72	28	11	22	37	1.88
5181059--5181239	90	2.0	91	94	1	319	27	28	13	30	1.94
5183762--5183794	2	16.5	2	100	0	66	51	0	0	48	1.00
5185026--5185056	16	1.9	16	100	0	62	29	32	19	19	1.96
5191156--5191185	12	2.5	12	94	0	51	26	26	13	33	1.93
5211571--5211631	27	2.2	27	85	8	79	39	1	4	54	1.32
5256514--5256539	2	13.0	2	100	0	52	50	0	0	50	1.00
5259214--5259338	63	2.0	64	91	3	207	38	19	14	28	1.90
5262209--5262253	19	2.4	19	92	0	72	42	11	13	33	1.79
5262218--5262256	19	2.1	19	100	0	78	38	15	10	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5264747--5264784	2	19.5	2	94	5	69	47	0	0	52	1.00
5271363--5271393	2	15.5	2	100	0	62	48	0	0	51	1.00
5276654--5276684	2	15.5	2	100	0	62	51	0	48	0	1.00
5285015--5285058	14	3.0	14	80	9	52	65	0	0	34	0.93
5291469--5291525	24	2.4	24	76	5	62	52	3	0	43	1.18
5295536--5295575	20	2.1	18	86	9	53	55	0	2	42	1.13
5296182--5296216	17	2.0	18	88	5	54	51	0	0	48	1.00
5296184--5296224	17	2.5	17	80	11	50	53	0	0	46	1.00
5297222--5297249	3	9.3	3	100	0	56	35	0	32	32	1.58
5310538--5310579	18	2.2	20	87	8	61	23	2	19	54	1.55
5310751--5310793	22	2.0	22	85	0	59	37	9	6	46	1.63
5310716--5310809	22	4.3	21	69	15	57	36	5	9	48	1.58
5334757--5334799	16	2.6	17	85	10	63	62	0	37	0	0.95
5344494--5344614	59	2.1	59	93	0	206	42	9	9	38	1.68
5365458--5365482	8	3.1	8	100	0	50	52	12	12	24	1.72
5369247--5369272	13	2.0	13	100	0	52	46	15	23	15	1.83
5370126--5370165	21	1.9	21	84	0	53	40	5	7	47	1.54
5370249--5370286	12	3.1	13	88	7	53	60	0	7	31	1.25
5372769--5372818	16	3.1	16	77	11	57	80	10	8	2	0.99
5378117--5378220	51	2.0	51	92	0	172	22	35	35	6	1.80
5378625--5378666	15	2.9	15	89	10	61	30	0	33	35	1.58
5378625--5378671	15	3.3	14	85	11	60	36	0	29	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5381444--5381479	2	18.0	2	100	0	72	50	0	0	50	1.00
5399751--5399812	27	2.4	26	82	15	76	41	9	6	41	1.63
5402957--5403064	39	2.7	39	84	1	135	35	8	30	25	1.86
5407365--5407402	20	2.0	19	85	10	51	15	21	7	55	1.66
5424212--5424269	28	2.0	28	83	9	73	63	1	0	34	1.04
5424274--5424328	22	2.4	24	80	20	73	40	1	0	58	1.09
5424280--5424322	21	2.0	21	91	8	70	41	0	0	58	0.98
5429203--5429265	33	1.9	33	83	6	83	36	7	6	49	1.58
5429287--5429431	55	2.5	60	76	14	183	45	8	10	35	1.70
5429458--5429545	34	2.8	29	83	11	88	57	4	6	30	1.45
5436368--5436398	14	2.1	15	94	5	55	61	6	6	25	1.45
5436483--5436548	9	7.6	9	74	17	50	46	1	0	51	1.10
5439656--5439696	2	21.0	2	90	5	66	53	0	0	46	1.00
5453333--5453391	24	2.4	25	78	13	70	50	3	1	44	1.28
5453563--5453608	23	2.0	23	83	4	58	47	4	2	45	1.34
5458489--5458562	37	2.0	37	97	0	139	45	20	5	28	1.73
5463736--5463778	20	2.2	20	88	8	63	39	0	4	55	1.20
5472220--5472274	21	2.6	22	88	8	80	52	0	0	47	1.00
5472235--5472280	21	2.2	22	84	7	60	50	0	0	50	1.00
5472229--5472282	22	2.4	23	85	14	78	48	0	0	51	1.00
5479770--5480028	122	2.1	122	98	0	500	51	6	6	35	1.52
5495358--5495390	6	5.7	6	92	7	59	87	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5495357--5495390	11	3.0	11	95	4	59	88	0	11	0	0.52
5497776--5497839	26	2.5	26	94	0	110	40	17	15	26	1.89
5507069--5507151	34	2.5	34	82	5	98	31	3	0	65	1.10
5507180--5507228	21	2.3	22	79	13	57	30	0	0	69	0.89
5507190--5507233	13	3.4	12	79	14	52	27	0	0	72	0.85
5507499--5507573	36	2.1	36	100	0	150	48	8	13	30	1.71
5512236--5512330	35	2.7	35	93	4	158	50	0	0	49	1.00
5512536--5512575	17	2.3	18	87	12	57	35	0	10	55	1.34
5512870--5512901	14	2.1	16	88	11	50	28	0	0	71	0.86
5513671--5513966	97	3.1	97	94	0	504	15	25	29	29	1.96
5513909--5514305	213	1.9	213	82	2	510	20	24	24	29	1.99
5519855--5519910	23	2.4	23	77	11	60	42	1	0	55	1.10
5520020--5520077	25	2.3	26	90	3	91	62	0	0	37	0.96
5520020--5520077	26	2.3	27	88	8	86	62	0	0	37	0.96
5520092--5520135	21	2.1	21	91	0	70	36	0	18	45	1.49
5527159--5527223	24	2.7	24	90	0	94	26	29	10	33	1.90
5536752--5536936	99	1.9	99	82	8	234	35	9	29	26	1.87
5543484--5543530	16	3.1	16	87	6	62	25	6	6	61	1.44
5551720--5551785	35	1.9	33	84	6	87	45	10	31	12	1.76
5561870--5561943	30	2.5	31	78	13	82	37	0	2	59	1.12
5561903--5561956	24	2.3	23	87	9	83	40	0	1	57	1.09
5581497--5581537	21	1.9	22	85	5	57	7	34	24	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5584096--5584157	31	2.0	30	84	3	79	33	8	8	50	1.61
5584169--5584352	76	2.4	78	75	5	185	33	10	13	42	1.78
5584419--5584466	13	3.4	13	76	18	51	47	6	2	43	1.40
5590032--5590087	15	3.7	15	87	0	85	33	7	23	35	1.82
5590032--5590090	30	2.0	30	93	0	100	35	8	22	33	1.84
5590313--5590493	22	8.3	21	70	19	106	32	1	0	65	1.07
5590418--5590482	6	10.8	6	75	18	55	32	0	0	67	0.91
5590300--5590608	29	10.9	29	72	20	178	32	2	0	64	1.12
5590458--5590515	15	3.9	15	80	11	66	37	1	0	60	1.07
5590286--5590534	26	9.1	25	72	18	135	33	2	0	63	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14