genome.fa.s11.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7669227--7669258	2	16.0	2	93	0	55	50	0	3	46	1.17
7671659--7671687	9	3.3	9	90	9	51	79	0	0	20	0.74
7671659--7671689	8	3.8	8	95	4	53	74	0	0	25	0.82
7672540--7672564	4	6.2	4	100	0	50	76	0	0	24	0.80
7673496--7673547	21	2.5	21	87	3	70	11	11	15	61	1.57
7678044--7678070	2	13.5	2	100	0	54	48	0	0	51	1.00
7687566--7687598	6	5.5	6	96	0	57	0	63	0	36	0.95
7687635--7687670	18	1.9	19	88	5	56	0	50	11	38	1.38
7687869--7687899	14	2.2	14	94	0	53	38	0	54	6	1.26
7690692--7690719	2	14.0	2	100	0	56	50	0	0	50	1.00
7691546--7691579	2	17.0	2	87	0	50	50	0	5	44	1.26
7705003--7705036	17	1.9	18	88	5	52	41	14	2	41	1.61
7706992--7707025	2	17.0	2	100	0	68	50	0	0	50	1.00
7707331--7707365	2	17.5	2	100	0	70	51	0	0	48	1.00
7707368--7707395	2	14.0	2	100	0	56	50	0	50	0	1.00
7711877--7711921	16	2.9	15	80	9	54	28	0	0	71	0.87
7724294--7724351	27	2.1	27	90	0	89	43	10	10	36	1.73
7729474--7729504	3	10.3	3	92	0	53	0	3	32	64	1.09
7736513--7736537	12	2.1	12	100	0	50	16	8	0	76	1.02
7746444--7746471	3	9.3	3	100	0	56	67	0	32	0	0.91
7747221--7747254	17	1.9	18	94	5	61	11	20	11	55	1.67
7751023--7751110	45	2.0	45	90	0	140	35	15	12	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7758487--7758526	21	1.9	21	84	0	53	17	5	0	77	0.94
7758486--7758524	19	2.0	20	85	5	53	17	5	0	76	0.96
7760796--7760857	9	6.9	9	77	0	61	35	19	37	8	1.81
7760814--7760881	30	2.3	30	79	5	75	35	11	41	11	1.78
7760970--7761017	12	4.0	12	80	0	60	27	29	41	2	1.67
7760966--7761006	21	2.0	21	90	0	64	29	24	41	4	1.75
7762074--7762105	15	2.1	15	94	0	55	46	0	37	15	1.46
7777034--7777201	36	4.7	36	85	0	237	36	20	19	23	1.95
7777034--7777201	72	2.3	72	98	0	327	36	20	19	23	1.95
7777925--7778059	72	1.9	72	90	0	216	21	21	20	36	1.95
7782182--7782343	78	2.0	81	92	4	276	46	19	12	20	1.83
7789795--7789822	6	4.7	6	100	0	56	0	0	64	35	0.94
7805354--7805393	21	1.9	21	100	0	80	20	25	15	40	1.90
7809209--7809236	2	14.0	2	100	0	56	50	0	0	50	1.00
7814048--7814072	5	5.0	5	100	0	50	20	60	0	20	1.37
7815614--7815655	2	21.5	2	95	4	77	0	50	0	50	1.00
7823482--7823508	2	13.5	2	100	0	54	48	0	0	51	1.00
7834089--7834116	2	14.0	2	100	0	56	50	0	0	50	1.00
7834958--7834993	2	18.0	2	94	0	63	50	2	0	47	1.15
7848067--7848091	2	12.5	2	100	0	50	0	52	0	48	1.00
7884351--7884528	90	2.0	90	90	0	284	28	20	19	30	1.97
7899289--7899314	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7909699--7909758	29	2.1	29	90	6	95	40	15	11	33	1.83
7925939--7925965	2	13.5	2	100	0	54	48	0	0	51	1.00
7927410--7927439	2	15.0	2	100	0	60	50	0	0	50	1.00
7937965--7937990	2	13.0	2	100	0	52	50	0	50	0	1.00
7945704--7945729	6	4.3	6	100	0	52	0	34	46	19	1.50
7960186--7960224	7	5.6	7	100	0	78	58	0	28	12	1.34
7964945--7964979	4	8.8	4	100	0	70	51	0	22	25	1.48
7968576--7968609	17	1.9	17	88	5	50	52	0	0	47	1.00
7970005--7970031	2	13.5	2	100	0	54	51	0	0	48	1.00
7989273--7989331	18	3.2	20	71	24	65	55	8	15	20	1.65
8046117--8046145	2	14.5	2	100	0	58	48	0	51	0	1.00
8086337--8086364	5	5.6	5	100	0	56	39	21	21	17	1.93
8099661--8099709	23	2.1	23	88	0	71	24	22	2	51	1.59
8099878--8099922	23	2.0	23	81	0	54	22	22	4	51	1.66
8105896--8106101	102	2.0	102	92	0	340	28	18	14	38	1.90
8106156--8106210	26	2.1	27	86	3	76	32	14	16	36	1.89
8106941--8107023	42	2.0	42	88	4	123	39	25	14	20	1.90
8107335--8107390	12	4.8	12	82	8	62	78	0	0	21	0.75
8107341--8107392	20	2.6	21	87	9	81	78	0	0	21	0.74
8107340--8107392	21	2.5	21	88	8	81	79	0	0	20	0.74
8109376--8109404	15	1.9	15	100	0	58	62	0	0	37	0.96
8109370--8109405	17	2.1	18	89	5	56	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8109819--8109850	2	16.0	2	93	0	55	50	3	0	46	1.17
8110138--8110265	65	1.9	67	90	3	206	50	7	4	37	1.52
8114999--8115062	15	4.5	15	70	18	55	51	3	0	45	1.17
8114998--8115070	21	3.5	21	75	0	83	50	4	0	45	1.20
8120970--8121001	16	1.9	17	93	6	57	46	6	12	34	1.67
8124575--8124727	83	1.9	81	81	2	189	31	11	13	43	1.79
8124736--8124867	45	2.9	45	87	0	165	29	18	16	34	1.94
8126056--8126088	15	2.2	15	94	0	57	36	12	15	36	1.84
8126573--8127934	340	4.0	332	78	10	1245	52	14	7	25	1.68
8127462--8127508	20	2.3	21	82	10	62	57	19	2	21	1.51
8127876--8127933	21	2.8	21	81	5	64	62	15	3	18	1.47
8128037--8128069	13	2.4	14	90	5	50	6	6	57	30	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!