genome.fa.s11.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  13  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6767160--6767248	45	2.0	45	93	0	151	44	6	3	44	1.46
6774896--6774921	3	8.7	3	100	0	52	69	0	0	30	0.89
6775987--6776012	2	13.0	2	100	0	52	50	0	50	0	1.00
6779713--6779749	2	18.5	2	94	0	65	2	48	0	48	1.15
6784588--6784614	12	2.2	12	100	0	54	0	55	0	44	0.99
6789541--6789572	14	2.1	16	88	11	50	62	0	0	37	0.95
6801985--6802009	9	2.8	9	100	0	50	56	44	0	0	0.99
6802240--6802292	2	27.0	2	86	3	72	3	49	0	47	1.19
6826557--6826655	49	2.0	49	94	0	171	35	23	15	26	1.94
6829847--6829996	75	2.0	75	89	0	228	30	22	19	28	1.98
6830219--6830338	59	2.0	59	95	0	213	36	20	16	25	1.94
6840997--6841056	32	1.9	32	83	10	79	61	0	3	35	1.12
6845491--6845519	3	9.7	3	100	0	58	0	31	0	68	0.89
6853496--6853541	20	2.4	19	89	10	67	60	0	2	36	1.09
6854111--6854209	49	2.1	48	88	3	146	35	9	9	46	1.67
6880599--6880637	17	2.3	18	82	13	55	17	2	5	74	1.12
6886565--6886613	2	24.5	2	82	0	62	48	8	0	42	1.32
6891024--6891062	12	3.2	12	85	0	51	53	10	0	35	1.35
6897034--6897092	24	2.5	24	77	5	66	40	5	1	52	1.33
6897844--6897875	9	3.6	9	100	0	64	21	0	31	46	1.52
6900463--6900509	23	2.0	23	95	0	85	25	10	4	59	1.49
6906986--6907247	130	2.0	130	100	0	524	23	21	22	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6924966--6925006	2	20.5	2	89	0	64	48	2	0	48	1.14
6932253--6932281	2	14.5	2	100	0	58	51	0	48	0	1.00
6932254--6932379	56	2.2	56	94	1	216	46	4	36	11	1.62
6934004--6934034	2	15.5	2	100	0	62	0	48	0	51	1.00
6938724--6938757	12	2.8	12	95	0	59	64	2	32	0	1.08
6952330--6952479	75	2.0	75	98	0	291	36	19	21	22	1.95
6964329--6964359	2	15.5	2	100	0	62	48	0	0	51	1.00
6986191--6986247	28	2.1	28	81	12	66	33	1	1	63	1.15
6986191--6986258	30	2.3	29	85	5	84	35	1	1	61	1.14
6999659--6999683	2	12.5	2	100	0	50	48	0	0	52	1.00
7014623--7014761	75	1.9	75	80	7	169	24	15	11	48	1.78
7015340--7015443	30	3.5	30	91	0	172	31	25	11	30	1.91
7017885--7018589	356	2.0	356	85	1	968	31	20	21	27	1.97
7018682--7019218	134	4.0	135	85	2	702	32	19	13	35	1.90
7024294--7024336	2	21.5	2	100	0	86	48	0	0	51	1.00
7056599--7056727	65	2.0	65	93	0	222	31	15	20	32	1.94
7076429--7076470	2	20.5	2	95	4	75	50	0	47	2	1.14
7079025--7079065	2	20.5	2	100	0	82	51	0	0	48	1.00
7080787--7080815	5	5.8	5	100	0	58	0	0	58	41	0.98
7101224--7101265	20	2.2	20	82	4	50	42	2	7	47	1.43
7107106--7107442	139	2.4	139	77	4	351	41	11	9	37	1.75
7110123--7110147	4	6.2	4	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7117121--7117219	32	3.1	32	97	0	189	21	4	47	27	1.68
7121225--7121257	2	16.5	2	93	0	57	54	0	45	0	0.99
7124727--7124779	2	26.5	2	100	0	106	49	0	0	50	1.00
7147642--7147785	74	2.0	73	85	1	198	44	8	6	40	1.60
7173487--7173518	2	16.0	2	93	0	55	53	0	46	0	1.00
7175341--7175410	34	2.1	34	100	0	140	28	2	14	54	1.54
7178722--7178821	31	3.2	31	81	16	141	47	5	8	40	1.55
7193200--7193229	15	2.1	15	93	6	53	20	43	16	20	1.88
7195036--7195071	2	17.5	2	88	5	54	47	0	2	50	1.15
7226851--7226876	2	13.0	2	100	0	52	50	0	0	50	1.00
7244215--7244259	18	2.5	17	82	10	54	35	0	2	62	1.08
7244333--7244396	30	2.1	30	85	5	85	56	6	3	34	1.40
7247836--7247866	1	31.0	1	100	0	62	0	0	100	0	0.00
7312923--7312963	2	20.5	2	100	0	82	48	0	0	51	1.00
7314518--7314567	24	2.1	24	96	0	91	50	12	12	26	1.74
7316595--7316636	21	2.2	18	87	12	57	35	0	4	59	1.19
7317756--7317831	28	2.9	26	77	16	68	51	1	0	47	1.09
7317756--7317821	28	2.4	29	82	10	84	53	1	0	45	1.09
7317784--7317829	19	2.4	20	78	7	60	56	0	0	43	0.99
7318317--7318421	18	5.5	19	69	23	60	53	2	0	43	1.15
7326202--7326231	4	7.2	4	92	7	51	73	23	3	0	0.98
7336429--7336472	16	2.7	17	82	10	56	81	9	9	0	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7336429--7336473	17	2.6	17	86	6	56	82	8	8	0	0.85
7337638--7337677	16	2.5	17	84	8	57	67	0	20	12	1.22
7350437--7350479	3	14.3	3	100	0	86	67	0	0	32	0.91
7351234--7351268	3	11.7	3	93	0	61	0	0	62	37	0.95
7351442--7351466	3	8.3	3	100	0	50	64	36	0	0	0.94
7371110--7371299	105	1.8	106	81	3	240	43	7	10	37	1.68
7378332--7378477	75	1.9	75	81	2	177	30	17	26	25	1.97
7391738--7391901	83	2.0	83	95	0	292	23	20	17	39	1.92
7392141--7392370	121	1.9	121	81	3	284	25	23	18	32	1.97
7406965--7406992	3	9.3	3	100	0	56	35	0	64	0	0.94
7409453--7409493	2	20.5	2	84	0	55	51	7	0	41	1.30
7411364--7411405	22	1.9	22	85	9	59	47	4	42	4	1.45
7411501--7411545	2	22.5	2	86	0	63	42	0	2	55	1.12
7427968--7428000	17	2.0	17	88	5	50	36	6	3	54	1.41
7443782--7443875	38	2.5	38	87	3	127	38	13	5	42	1.67
7458198--7458234	2	18.5	2	94	0	65	48	0	48	2	1.15
7483535--7483564	1	30.0	1	100	0	60	0	0	100	0	0.00
7490600--7490663	31	2.1	31	91	5	103	39	15	7	37	1.77
7496253--7496302	20	2.5	21	77	6	59	60	4	10	26	1.47
7500046--7500161	60	1.9	60	98	0	223	37	12	19	30	1.88
7515882--7515913	12	2.7	12	100	0	64	12	0	53	34	1.39
7515880--7515913	15	2.3	15	89	0	50	11	0	52	35	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7526340--7526393	27	2.0	27	100	0	108	33	11	14	40	1.82
7539702--7539729	3	9.3	3	100	0	56	0	32	0	67	0.91
7540165--7540221	23	2.5	23	80	8	55	47	3	3	45	1.37
7543165--7543359	46	4.2	47	87	7	272	5	55	21	17	1.62
7557634--7557660	2	13.5	2	100	0	54	48	0	51	0	1.00
7583558--7583586	12	2.3	13	94	5	51	0	13	10	75	1.04
7589666--7589725	23	2.7	21	85	12	75	56	1	0	41	1.09
7596845--7596876	15	2.1	15	100	0	64	40	34	25	0	1.56
7603528--7603633	14	7.3	14	64	8	59	33	6	30	29	1.83
7603528--7603632	43	2.4	44	95	3	185	33	6	30	29	1.83
7603684--7603712	12	2.4	12	100	0	58	17	31	6	44	1.75
7605277--7605308	2	16.0	2	93	0	55	53	0	46	0	1.00
7614582--7614632	15	3.4	15	71	10	50	11	1	56	29	1.46
7614582--7614650	30	2.3	30	87	5	104	10	2	57	28	1.46
7614580--7614845	54	4.7	54	73	11	165	13	4	56	25	1.56
7614649--7614724	36	2.1	36	85	0	98	11	5	56	26	1.56
7614714--7614770	21	2.5	23	80	8	64	15	3	59	21	1.51
7614635--7614945	30	10.4	30	65	13	102	14	4	56	25	1.56
7614760--7615007	54	4.8	54	69	15	182	16	3	56	23	1.56
7614744--7615049	150	2.0	150	98	1	587	15	4	56	23	1.57
7614757--7615030	96	2.9	96	81	5	261	15	3	56	23	1.55
7614898--7615028	30	4.2	30	63	11	82	16	3	57	22	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7614757--7614890	24	5.6	24	67	13	69	14	3	58	23	1.52
7614787--7615095	150	2.1	149	90	3	478	17	4	55	22	1.59
7615218--7615265	12	4.1	11	76	10	51	4	10	56	29	1.52
7637019--7637051	13	2.4	14	90	5	50	66	9	0	24	1.20
7639132--7639178	12	4.0	12	80	5	51	46	4	0	48	1.21
7639977--7640030	16	3.4	17	80	12	51	51	1	0	46	1.11
7639978--7640029	15	3.3	16	82	12	63	51	1	0	46	1.12
7648864--7648902	19	2.1	19	85	9	53	43	5	0	51	1.24
7651743--7651784	22	1.9	22	90	0	66	38	0	0	61	0.96
7663913--7664033	60	2.0	60	93	3	208	42	19	8	29	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14