genome.fa.s11.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397264.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_130.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8132550

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1638 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3120733--3120763	2	16.0	2	93	6	55	0	48	0	51	1.00
3127333--3127437	49	2.0	52	87	10	153	26	6	23	42	1.79
3152015--3152048	2	17.0	2	93	0	59	52	0	47	0	1.00
3154778--3154805	3	9.3	3	100	0	56	67	0	0	32	0.91
3157790--3157930	70	2.0	70	92	0	237	43	20	14	21	1.87
3179355--3179410	24	2.3	23	85	8	76	26	0	35	37	1.57
3179355--3179425	24	2.9	24	81	14	74	29	0	35	35	1.58
3180767--3181461	210	3.3	210	88	1	1007	33	16	21	28	1.95
3195539--3195602	27	2.4	27	89	0	92	6	18	14	60	1.54
3220740--3220780	22	1.9	21	85	5	55	14	2	51	31	1.56
3227436--3227718	36	7.9	36	72	5	198	45	20	8	25	1.79
3227352--3227648	72	4.2	72	77	6	264	44	22	9	24	1.81
3228819--3228884	30	2.2	30	81	5	80	57	3	4	34	1.34
3231133--3231372	119	2.0	119	100	0	480	18	19	14	48	1.81
3231589--3231618	2	15.0	2	100	0	60	0	50	0	50	1.00
3236296--3236381	40	2.1	42	80	8	97	46	3	32	17	1.65
3240315--3240360	14	3.3	14	76	17	51	47	0	2	50	1.13
3248685--3248731	2	23.5	2	100	0	94	48	0	0	51	1.00
3264409--3264580	50	3.5	48	73	17	147	31	6	1	60	1.29
3264455--3264520	27	2.5	27	85	11	84	28	1	0	69	0.97
3264385--3264589	97	2.1	98	89	1	331	32	5	0	61	1.25
3264440--3264587	47	3.1	47	75	16	158	31	5	0	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3264450--3264607	33	4.8	32	71	20	87	31	5	0	62	1.18
3264622--3264737	5	22.4	5	71	16	58	27	1	1	68	1.08
3264683--3264765	41	2.0	40	84	6	105	36	0	1	62	1.03
3265016--3265068	28	1.9	27	85	11	72	45	0	1	52	1.11
3268586--3268632	25	1.9	25	91	4	78	19	21	31	27	1.97
3271002--3271128	54	2.4	54	94	0	218	49	15	16	18	1.80
3276501--3276550	24	2.2	24	82	7	59	72	2	24	2	1.06
3276498--3276552	21	2.5	22	80	14	60	69	1	25	3	1.15
3278079--3278167	43	2.1	43	93	0	151	38	25	4	31	1.76
3278541--3278596	26	2.2	26	100	0	112	42	14	17	25	1.87
3278541--3278604	26	2.5	26	94	0	101	45	12	17	25	1.83
3278849--3278960	18	6.2	18	88	0	134	8	46	25	18	1.78
3280925--3281005	28	2.9	28	98	0	153	35	18	23	22	1.95
3281084--3281121	17	2.3	17	95	4	69	39	15	15	28	1.89
3289663--3289702	18	2.2	18	95	0	71	22	2	10	65	1.35
3309051--3309166	56	2.1	56	90	0	178	40	8	25	25	1.84
3312763--3312844	29	2.8	30	68	20	73	29	4	8	57	1.49
3313387--3313446	30	2.0	30	83	6	77	30	3	8	58	1.44
3335279--3335411	66	2.0	66	89	0	203	27	31	12	28	1.93
3338360--3338426	32	2.1	32	82	0	80	41	19	10	28	1.84
3341059--3341115	28	2.0	28	100	0	114	33	17	10	38	1.84
3351117--3351161	22	2.0	23	83	12	58	26	6	17	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3351771--3351812	19	2.2	19	84	16	52	45	4	26	23	1.73
3353747--3353788	11	3.8	12	81	15	54	47	2	0	50	1.14
3353747--3353788	2	22.5	2	81	13	54	47	2	0	50	1.14
3354551--3354579	2	14.5	2	100	0	58	48	0	0	51	1.00
3355041--3355082	4	10.8	4	84	5	50	19	21	7	52	1.69
3358273--3358302	2	15.0	2	100	0	60	0	50	0	50	1.00
3363930--3363983	27	2.0	27	88	0	81	42	22	5	29	1.76
3369536--3369560	7	3.6	7	100	0	50	88	0	0	12	0.53
3369983--3370009	2	13.5	2	100	0	54	48	0	0	51	1.00
3370457--3370481	7	3.6	7	100	0	50	60	0	28	12	1.32
3371492--3371530	2	19.5	2	100	0	78	48	0	0	51	1.00
3380200--3380274	39	1.9	38	89	7	116	34	18	9	37	1.83
3381096--3381144	14	3.4	14	78	10	53	77	8	0	14	0.98
3381100--3381159	25	2.4	24	81	8	66	76	8	3	11	1.12
3390629--3391325	227	3.0	227	88	4	954	32	14	23	28	1.94
3393436--3393479	14	3.1	14	81	15	54	59	2	0	38	1.10
3393494--3393533	17	2.4	17	87	8	55	57	5	5	32	1.42
3395437--3395475	19	2.1	19	85	0	51	20	15	10	53	1.70
3402577--3402634	27	2.1	27	87	0	80	32	13	18	34	1.91
3406051--3406077	2	13.5	2	100	0	54	48	0	0	51	1.00
3406591--3406636	24	1.9	24	86	0	65	39	15	15	30	1.88
3406687--3406749	31	2.1	30	81	3	72	52	7	9	30	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3406745--3406815	26	2.6	29	71	13	69	39	9	7	43	1.65
3412376--3412403	2	14.0	2	100	0	56	50	0	0	50	1.00
3422405--3422503	50	2.0	50	100	0	198	30	20	29	20	1.97
3426113--3426320	114	1.8	113	86	1	299	44	6	14	33	1.72
3435807--3435852	1	46.0	1	93	0	74	2	2	95	0	0.30
3441042--3441069	2	14.0	2	100	0	56	50	0	0	50	1.00
3443624--3443660	2	19.0	2	88	5	58	48	0	2	48	1.15
3445675--3445704	15	2.0	15	93	0	51	50	20	13	16	1.78
3473605--3473646	23	1.9	21	85	9	57	28	2	0	69	1.01
3475814--3475849	16	2.2	17	90	5	56	63	0	0	36	0.94
3480149--3480213	32	2.0	32	94	5	114	50	18	12	18	1.77
3485382--3485421	19	2.1	19	90	0	62	50	0	0	50	1.00
3495760--3495814	28	2.0	28	88	0	83	41	29	12	16	1.85
3499342--3499385	16	2.9	16	86	6	56	45	0	0	54	0.99
3499346--3499405	29	2.0	29	84	9	77	46	0	0	53	1.00
3503569--3503666	25	3.9	24	73	16	90	61	1	2	35	1.15
3504915--3504954	19	2.0	21	85	9	57	52	0	0	47	1.00
3505050--3505081	8	3.9	8	95	4	55	59	0	0	40	0.97
3523899--3523988	45	2.0	45	100	0	180	35	20	22	22	1.96
3526465--3526707	81	3.0	81	96	0	452	22	21	21	34	1.97
3528957--3529061	23	5.0	22	72	18	73	5	2	59	32	1.36
3528898--3529142	18	12.4	18	70	17	103	8	4	57	28	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3528916--3529065	41	3.6	41	81	4	158	9	3	58	29	1.46
3529037--3529154	18	6.3	18	78	13	105	8	7	57	26	1.55
3529072--3529198	59	2.2	57	80	10	134	11	9	53	25	1.66
3529201--3529238	18	2.1	18	90	0	58	15	5	57	21	1.57
3529171--3529452	60	4.7	60	90	1	395	15	10	51	21	1.73
3529262--3529299	18	2.1	18	90	0	58	15	5	57	21	1.57
3529339--3529449	30	3.7	30	72	21	99	10	9	54	25	1.66
3529542--3529593	18	2.9	18	70	0	50	7	1	61	28	1.34
3539346--3539382	19	1.9	19	89	10	58	32	0	0	67	0.91
3539324--3539393	26	2.6	27	82	13	83	32	0	4	62	1.14
3543454--3543528	31	2.4	31	86	6	98	38	5	14	41	1.69
3543905--3543957	27	1.9	28	88	11	83	41	5	1	50	1.36
3563641--3563711	21	3.4	21	82	0	70	12	39	22	25	1.89
3595444--3595550	37	3.1	35	83	5	137	38	21	22	17	1.93
3595443--3595553	33	3.2	33	79	9	132	38	20	21	18	1.93
3601957--3602186	27	8.4	26	71	8	120	43	4	6	46	1.49
3602049--3602186	54	2.6	54	82	0	159	44	2	6	45	1.44
3602157--3602244	28	3.2	27	71	7	70	42	5	11	40	1.64
3606449--3606483	17	2.1	17	100	0	70	22	22	11	42	1.85
3640314--3640354	3	13.7	3	84	0	55	0	31	0	68	0.90
3641420--3641460	20	2.0	21	90	4	66	70	0	7	21	1.11
3642998--3643028	12	2.6	12	94	0	53	3	41	0	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661072--3661153	42	2.0	42	92	0	137	29	20	14	35	1.93
3663714--3663740	2	13.5	2	100	0	54	48	0	0	51	1.00
3667780--3667829	21	2.4	22	76	10	59	36	4	4	56	1.37
3677132--3677170	21	1.9	20	84	5	51	53	2	0	43	1.14
3677256--3677286	2	15.5	2	93	0	53	48	0	3	48	1.17
3681291--3681325	15	2.3	15	95	0	61	48	0	8	42	1.33
3688391--3688432	19	2.2	18	84	16	50	11	0	16	71	1.14
3692302--3692335	17	2.0	17	100	0	68	17	29	17	35	1.93
3696079--3696107	2	14.5	2	100	0	58	51	0	0	48	1.00
3703944--3703997	20	2.7	20	74	8	56	31	5	14	48	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14