genome.fa.s1129.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001129.1 Hibiscus syriacus cultivar Beakdansim tig00002237_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21326069

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   

This is table  89  of  89  ( 10573 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21316712--21316744	16	2.1	16	100	0	66	6	12	24	57	1.57
21318155--21318337	21	8.6	22	76	14	129	20	18	22	39	1.92
21318161--21318350	42	4.5	42	78	10	181	21	17	22	38	1.93
21318155--21318341	63	2.9	64	85	4	263	20	17	22	39	1.92
21318430--21318463	12	3.1	11	91	8	52	29	52	17	0	1.45
21319044--21319199	21	7.6	20	83	11	174	23	21	22	32	1.98
21319065--21319179	62	1.9	60	85	7	160	24	21	20	33	1.97
21323096--21323243	29	5.1	29	95	2	255	56	4	15	24	1.57
21323096--21323244	14	10.4	13	71	26	90	55	4	15	24	1.57
21323116--21323262	29	5.1	28	93	1	132	57	4	14	24	1.55
21323096--21323262	87	1.9	86	86	3	237	56	4	13	25	1.55
21323109--21323292	87	2.1	87	81	4	201	58	4	13	24	1.53
21325507--21325549	19	2.4	18	81	11	52	20	2	30	46	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89

The End!