genome.fa.s2647.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002647.1 Hibiscus syriacus cultivar Beakdansim tig00005406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7027529

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  25  of  26  ( 3011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6719911--6719993	11	6.9	11	71	16	58	39	1	56	2	1.20
6719886--6719996	50	2.1	53	90	6	174	40	1	54	2	1.25
6719969--6719999	15	2.1	14	94	5	53	41	0	51	6	1.27
6722896--6722944	25	2.0	25	100	0	98	38	16	12	32	1.86
6741668--6741769	3	36.0	3	79	11	117	40	0	59	0	0.97
6741675--6741768	14	6.6	14	93	4	154	40	0	59	0	0.97
6743576--6743617	20	2.0	21	90	4	68	26	26	26	21	1.99
6749379--6749423	21	2.2	21	88	4	65	24	33	28	13	1.93
6755715--6756048	164	2.0	164	89	1	510	36	21	5	35	1.77
6759902--6759944	2	21.5	2	100	0	86	51	0	0	48	1.00
6759997--6760162	69	2.4	69	79	4	181	31	19	19	30	1.96
6759946--6760295	70	5.1	69	74	6	284	28	20	20	30	1.97
6760137--6760256	62	1.9	62	86	0	168	28	20	18	32	1.96
6762430--6762831	42	9.7	43	83	8	455	27	20	18	32	1.96
6762427--6762831	83	4.9	83	85	4	489	27	20	18	32	1.96
6762427--6762831	125	3.3	125	89	2	577	27	20	18	32	1.96
6762884--6762994	58	1.9	58	96	0	204	33	8	30	27	1.86
6766424--6766745	43	7.5	43	77	9	273	23	20	21	34	1.96
6766424--6766746	128	2.5	132	78	8	322	24	20	21	34	1.96
6766424--6766642	85	2.6	86	84	5	302	22	21	23	32	1.98
6766680--6766779	43	2.3	44	86	5	132	25	17	21	37	1.94
6769367--6769502	68	2.0	68	100	0	272	25	16	19	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6782758--6782814	23	2.5	23	75	11	62	8	12	7	71	1.29
6785656--6785689	17	2.1	16	88	5	50	14	8	0	76	1.01
6786240--6786264	2	12.5	2	100	0	50	48	0	0	52	1.00
6788754--6788787	17	1.9	17	88	5	50	32	2	17	47	1.63
6788891--6788968	3	27.0	3	80	7	81	38	0	57	3	1.17
6790702--6790743	20	2.0	21	86	4	59	26	26	23	23	2.00
6792968--6793143	90	2.0	90	96	0	325	38	23	8	29	1.85
6793719--6794052	164	2.0	164	88	1	492	36	21	6	35	1.79
6794346--6794490	72	2.0	72	100	0	290	37	13	9	38	1.78
6798101--6798258	68	2.3	70	83	2	194	25	22	20	31	1.98
6798014--6798362	70	5.1	70	73	7	270	28	21	19	30	1.98
6798204--6798323	62	1.9	62	87	0	177	29	21	17	31	1.96
6804006--6804040	17	2.1	17	94	0	61	37	25	14	22	1.92
6812611--6812681	33	2.2	33	94	0	124	30	7	7	54	1.54
6816237--6816390	61	2.5	61	82	4	182	26	24	16	31	1.97
6825901--6825951	19	2.8	18	80	19	54	45	3	3	47	1.40
6825903--6825951	17	2.8	17	87	9	64	44	4	4	46	1.41
6825942--6826005	15	3.7	16	71	28	51	48	7	4	39	1.53
6825920--6825992	18	3.9	19	81	12	73	46	6	4	42	1.49
6825942--6825992	9	5.4	9	73	17	50	49	7	3	39	1.51
6825980--6826117	40	3.3	40	71	21	129	49	2	5	42	1.41
6826041--6826201	2	82.5	2	68	20	83	48	1	6	43	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6826041--6826201	13	11.8	13	70	20	71	48	1	6	43	1.39
6825980--6826149	87	2.0	86	94	3	297	47	2	6	43	1.41
6826024--6826201	45	4.2	40	69	19	110	48	1	5	43	1.36
6825976--6826181	87	2.5	83	84	11	248	48	2	6	42	1.43
6826259--6826315	7	8.7	6	79	11	51	31	50	0	17	1.46
6826259--6826313	21	2.8	20	74	17	60	32	49	0	18	1.48
6827675--6827714	11	3.5	11	83	6	53	40	7	5	47	1.54
6827965--6828018	23	2.3	24	90	3	92	48	7	0	44	1.31
6829504--6829653	75	2.0	75	100	0	300	38	9	16	36	1.80
6845471--6845527	21	2.7	21	94	0	96	35	1	17	45	1.59
6846263--6846294	12	2.7	12	100	0	64	50	9	40	0	1.35
6850236--6850301	23	2.9	23	83	0	78	19	28	22	28	1.98
6850599--6850633	2	17.5	2	100	0	70	48	0	0	51	1.00
6854553--6854578	2	13.0	2	100	0	52	50	0	0	50	1.00
6855343--6855404	23	2.7	23	74	0	61	20	24	27	27	1.99
6860442--6860501	23	2.6	23	83	0	75	18	26	25	30	1.98
6864350--6864385	2	18.0	2	100	0	72	50	0	0	50	1.00
6866822--6866870	21	2.3	21	100	0	98	36	10	6	46	1.63
6866860--6866973	52	2.2	51	83	7	142	50	5	8	35	1.56
6866916--6867070	74	2.1	73	83	3	186	41	7	14	36	1.74
6867210--6867366	83	1.9	82	83	6	201	46	7	7	38	1.60
6867287--6867530	121	2.0	123	85	6	336	39	10	8	40	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6867566--6868015	77	5.8	77	75	8	347	37	16	8	38	1.78
6869186--6869287	45	2.3	45	81	6	118	43	1	4	50	1.35
6869269--6869312	13	3.4	13	87	6	54	43	2	0	54	1.12
6869747--6869832	43	2.0	43	97	0	163	36	13	26	23	1.93
6869929--6869996	30	2.2	31	84	5	84	19	8	27	44	1.80
6869990--6870071	28	2.6	33	74	18	93	12	8	36	42	1.73
6869998--6870062	28	2.3	28	89	0	94	13	7	38	40	1.74
6870091--6870158	27	2.5	27	78	2	82	13	8	30	47	1.73
6872016--6872046	2	16.0	2	93	6	55	48	0	0	51	1.00
6872329--6872360	15	2.1	16	88	11	50	71	0	0	28	0.86
6872489--6872555	23	3.0	22	75	14	66	65	1	4	28	1.21
6872584--6872627	21	2.2	20	84	12	54	65	0	2	31	1.05
6874258--6874425	74	2.3	73	93	1	282	29	23	19	28	1.98
6874386--6874724	45	7.5	45	90	2	500	33	19	22	24	1.97
6874707--6874783	30	2.6	30	89	2	120	41	19	16	22	1.90
6875579--6875627	22	2.2	22	96	0	89	40	14	14	30	1.85
6875996--6876156	54	3.0	54	89	0	252	25	22	14	37	1.93
6877040--6877237	75	2.6	74	85	6	240	30	23	15	30	1.95
6884154--6884205	2	26.0	2	100	0	104	50	0	0	50	1.00
6884217--6884298	11	7.1	11	74	19	60	63	2	6	28	1.31
6884216--6884282	23	3.0	22	74	12	55	65	1	4	28	1.21
6885661--6885696	17	2.2	16	90	5	54	63	0	0	36	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6894991--6895068	30	2.6	30	83	4	86	39	19	19	21	1.92
6898824--6898895	30	2.4	29	80	8	83	40	8	19	31	1.81
6903017--6903191	89	2.0	86	92	3	217	46	9	16	27	1.78
6909621--6909930	45	6.7	45	82	7	361	22	21	11	43	1.85
6909690--6909925	91	2.6	90	86	2	330	22	22	11	43	1.85
6910012--6910199	56	3.4	56	83	2	225	34	18	10	37	1.85
6913237--6913281	13	3.4	14	84	9	58	37	31	11	20	1.87
6918293--6918345	22	2.3	24	83	6	65	22	3	3	69	1.20
6918293--6918347	23	2.4	25	79	14	64	23	3	3	69	1.21
6925940--6926024	21	4.0	21	72	22	70	22	18	27	31	1.97
6927855--6927883	6	4.8	6	100	0	58	34	0	51	13	1.42
6933359--6933410	23	2.2	25	90	10	83	21	0	7	71	1.11
6934069--6934274	76	2.8	71	81	9	211	31	0	10	57	1.38
6934071--6934274	71	2.8	75	81	10	228	30	0	10	57	1.38
6939585--6939732	76	2.0	74	84	11	194	27	2	13	56	1.51
6940365--6940398	17	2.0	17	88	0	50	23	0	2	73	0.97
6940444--6940514	31	2.3	31	80	9	83	28	2	0	69	1.03
6955374--6956059	342	2.0	342	99	0	1345	40	11	18	29	1.86
6962756--6962850	41	2.2	44	76	16	108	27	5	11	55	1.57
6962763--6962844	41	2.0	41	85	4	112	28	6	12	53	1.61
6966594--6966706	38	3.0	37	70	10	113	41	11	15	31	1.82
6966593--6966704	36	3.1	36	75	3	125	41	10	15	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6966610--6966983	39	9.8	39	81	5	417	36	15	16	31	1.90
6972757--6972802	22	2.0	24	87	8	69	13	15	8	63	1.52
6985435--6985459	13	1.9	13	100	0	50	48	8	0	44	1.32
6985444--6985487	20	2.2	20	84	8	54	50	4	6	38	1.50
6991301--6991606	83	3.7	83	84	1	382	35	14	13	36	1.86
6991318--6991627	165	1.9	166	83	4	403	35	14	13	36	1.86
6991300--6991643	83	4.2	83	83	3	356	36	14	13	36	1.85
6995049--6995355	43	7.1	43	82	3	348	41	16	21	20	1.90
6995049--6995355	131	2.4	131	86	4	417	41	16	21	20	1.90
7010929--7010968	8	5.0	8	96	0	71	27	0	72	0	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26