genome.fa.s2647.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002647.1 Hibiscus syriacus cultivar Beakdansim tig00005406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7027529

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  7  of  26  ( 3011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1390193--1390957	113	6.7	113	75	11	634	27	19	14	38	1.91
1390552--1390854	123	2.5	123	87	4	411	23	20	15	40	1.91
1391350--1391395	22	2.1	22	84	8	58	45	6	17	30	1.73
1392607--1392845	75	3.2	75	92	0	397	30	24	17	28	1.97
1405053--1405092	15	2.6	15	92	4	62	57	12	15	15	1.66
1405053--1405102	23	2.2	22	89	3	73	56	10	16	18	1.67
1405055--1405093	8	5.0	8	90	6	53	53	12	15	17	1.72
1405998--1406041	23	2.0	23	81	4	54	50	11	2	36	1.51
1411930--1412010	21	3.8	21	79	7	76	24	34	24	16	1.95
1415901--1415967	28	2.5	28	83	7	77	61	1	4	32	1.25
1417515--1417566	26	2.0	27	88	3	79	0	30	15	53	1.42
1417919--1417993	3	25.0	3	79	15	57	60	0	0	40	0.97
1417919--1417960	10	4.3	10	82	11	52	66	0	0	33	0.92
1417919--1417958	13	3.0	13	86	13	55	67	0	0	32	0.91
1417919--1417988	28	2.5	28	83	2	79	58	0	0	41	0.98
1418147--1418200	20	2.7	19	75	8	63	33	31	18	16	1.93
1418250--1418525	20	13.6	20	75	9	150	39	23	18	18	1.92
1418331--1418524	40	4.8	41	90	1	302	38	24	18	18	1.93
1418331--1418537	81	2.6	81	88	3	265	37	24	18	19	1.94
1419082--1419171	20	4.8	20	75	15	77	48	21	18	11	1.78
1419082--1419182	19	5.5	19	77	12	77	48	22	17	10	1.78
1419178--1419309	19	7.1	19	77	11	121	12	21	20	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1419245--1419300	20	2.8	20	80	20	80	14	23	21	41	1.89
1421000--1421379	94	4.1	94	94	1	620	21	12	18	47	1.82
1421467--1421527	19	3.6	17	78	17	74	40	24	24	9	1.85
1421427--1421527	19	5.5	19	70	20	72	42	23	20	12	1.87
1421537--1421657	19	6.8	19	68	19	91	11	21	20	46	1.82
1421540--1421633	33	2.8	33	95	0	170	10	22	21	45	1.82
1422110--1422176	21	3.2	21	66	6	55	23	35	20	19	1.95
1422058--1422176	42	2.8	42	81	5	107	22	36	18	22	1.95
1423525--1423551	14	1.9	14	100	0	54	40	0	22	37	1.54
1423715--1423873	33	4.6	33	78	10	165	13	21	18	45	1.84
1423740--1423873	20	7.5	19	72	18	99	14	20	20	44	1.87
1423799--1423859	14	4.0	14	71	19	50	11	21	21	45	1.82
1426318--1426371	24	2.2	24	93	0	90	40	20	18	20	1.91
1426318--1426385	24	2.8	24	84	0	64	38	20	17	23	1.93
1427231--1427384	20	7.6	20	75	13	129	20	17	25	36	1.94
1427228--1427361	41	3.3	40	87	3	189	19	18	23	38	1.93
1427228--1427403	41	4.3	40	80	7	187	19	17	25	38	1.93
1427244--1427404	61	2.7	61	78	9	177	19	16	25	37	1.93
1427395--1427425	15	2.1	15	100	0	62	19	12	12	54	1.70
1427231--1427437	20	10.5	20	71	13	106	19	17	24	39	1.92
1429186--1429216	3	10.0	3	93	6	53	67	0	0	32	0.91
1432468--1432510	20	2.4	19	82	17	56	25	16	11	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1433581--1433692	20	5.7	20	71	7	77	42	27	16	13	1.85
1433642--1433891	20	12.5	20	81	6	229	37	24	17	20	1.93
1434574--1434620	24	2.0	24	87	8	69	25	14	21	38	1.92
1434795--1434819	12	2.1	12	100	0	50	72	0	28	0	0.86
1437154--1437251	19	5.4	19	82	13	134	14	21	17	46	1.83
1437135--1437251	53	2.2	53	96	1	218	13	23	17	45	1.84
1437358--1437394	14	2.6	14	91	0	65	45	21	0	32	1.52
1439376--1439432	14	3.7	14	77	20	60	45	22	21	10	1.82
1439357--1439449	33	2.8	33	95	0	168	47	21	20	10	1.80
1439320--1439454	19	7.6	19	76	16	128	45	23	19	11	1.82
1439450--1439578	19	7.3	19	75	17	125	9	16	28	45	1.78
1439450--1439541	33	2.8	33	93	3	150	8	17	28	45	1.78
1439622--1439999	93	4.1	93	96	2	717	45	18	12	22	1.83
1439622--1439999	183	2.0	185	97	1	715	45	18	12	22	1.83
1441701--1441790	14	5.7	14	74	23	81	42	23	25	8	1.83
1441693--1441807	33	3.5	33	95	0	212	45	20	24	9	1.81
1441700--1441812	19	6.8	18	72	23	88	43	22	24	9	1.83
1441824--1441877	14	3.5	14	73	22	54	7	25	24	42	1.80
1441808--1441888	33	2.5	33	93	0	135	7	23	22	46	1.76
1441864--1441941	41	1.9	41	94	0	138	11	26	16	44	1.82
1441865--1441940	21	3.7	21	82	3	100	10	26	17	46	1.80
1442020--1442090	33	2.2	33	86	0	97	49	16	22	11	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1442272--1442326	22	2.5	22	81	0	74	20	16	40	23	1.91
1442472--1442665	20	9.6	20	82	5	221	19	19	25	35	1.95
1442472--1442665	60	3.2	60	83	0	253	19	19	25	35	1.95
1442613--1442707	20	4.7	20	79	5	102	16	17	24	41	1.90
1442652--1442775	21	6.0	21	72	5	108	25	16	23	34	1.95
1442638--1442749	41	2.7	41	91	6	174	23	16	21	38	1.93
1446266--1446344	26	3.0	26	98	0	149	34	26	13	25	1.94
1447396--1447791	49	8.0	49	90	2	587	38	15	20	25	1.92
1447396--1447786	198	2.0	197	92	1	649	38	14	21	25	1.91
1449119--1449160	19	2.2	19	100	0	84	42	4	7	45	1.52
1449119--1449166	19	2.6	19	93	3	71	43	4	6	45	1.48
1449139--1449509	184	2.0	183	92	2	618	41	3	9	45	1.53
1450944--1450998	21	2.6	21	91	0	92	30	18	23	27	1.97
1451502--1451536	12	2.8	13	86	8	54	40	5	8	45	1.58
1453819--1453873	23	2.5	22	82	5	67	32	16	21	29	1.95
1461538--1461884	49	7.1	49	83	4	385	39	13	17	28	1.88
1461538--1461884	98	3.5	98	83	1	435	39	13	17	28	1.88
1461538--1461882	147	2.3	147	85	1	467	40	13	17	28	1.88
1469070--1469273	102	2.0	102	98	0	390	28	17	9	44	1.81
1476378--1476421	21	2.2	20	83	4	52	63	9	18	9	1.49
1476918--1476951	17	1.9	18	94	5	61	41	2	5	50	1.42
1479668--1479739	36	2.0	36	97	0	135	29	26	13	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1495950--1496003	25	2.2	25	96	0	99	35	0	37	27	1.57
1497109--1497208	48	2.1	48	96	0	182	23	18	10	49	1.77
1498201--1498234	17	2.0	17	88	0	50	47	5	2	44	1.42
1515391--1515424	17	2.0	17	94	0	59	41	8	26	23	1.83
1518159--1518233	37	2.0	38	97	2	143	42	22	16	18	1.88
1521833--1521912	42	1.9	42	86	0	115	21	17	6	55	1.64
1528635--1528687	17	3.1	17	88	0	79	28	28	26	16	1.97
1530847--1530903	24	2.4	24	93	0	96	40	19	12	28	1.87
1533205--1533244	16	2.4	17	84	16	57	30	30	20	20	1.97
1539017--1539064	19	2.5	19	86	6	62	29	12	2	56	1.48
1549950--1549990	2	20.5	2	100	0	82	48	0	0	51	1.00
1550123--1550212	29	3.1	29	82	6	119	22	20	8	48	1.76
1550754--1551129	34	9.8	34	68	22	149	28	23	12	35	1.91
1550740--1551153	79	5.2	79	91	0	666	27	24	12	35	1.92
1550785--1551095	45	7.7	44	68	22	196	27	25	12	34	1.92
1553598--1553622	2	12.5	2	100	0	50	48	0	0	52	1.00
1556163--1556574	79	5.2	79	89	2	555	27	24	12	35	1.91
1556251--1556551	34	7.9	34	70	22	172	28	25	11	34	1.91
1556163--1556574	157	2.6	158	88	1	585	27	24	12	35	1.91
1556998--1557195	95	2.1	96	82	2	247	27	19	16	36	1.93
1559512--1559564	21	2.5	22	84	9	65	26	26	16	30	1.97
1565161--1565187	6	4.5	6	100	0	54	85	0	0	14	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1568712--1568764	21	2.5	21	81	0	61	20	28	18	32	1.97
1568754--1568805	20	2.5	21	84	3	70	38	19	21	21	1.94
1568977--1569046	22	3.4	22	75	15	76	30	38	12	18	1.88
1569383--1569472	20	4.6	20	84	6	94	14	16	23	45	1.84
1571356--1571499	20	7.5	20	86	9	165	36	21	19	22	1.95
1571356--1571520	40	4.4	40	79	15	176	37	21	20	21	1.94
1571527--1571680	20	8.4	20	78	16	136	16	20	22	40	1.90
1571514--1571660	33	4.2	34	75	11	143	16	21	22	40	1.91
1571905--1572010	19	5.8	19	80	11	132	14	22	17	45	1.85
1571910--1572043	33	3.8	33	79	11	142	14	23	19	42	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26