genome.fa.s2647.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002647.1 Hibiscus syriacus cultivar Beakdansim tig00005406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7027529

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  8  of  26  ( 3011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1571905--1572043	71	1.9	73	86	5	203	13	23	19	43	1.87
1572015--1572103	20	4.4	20	86	0	133	16	23	24	34	1.95
1573419--1573448	15	2.0	15	100	0	60	33	13	13	40	1.83
1575404--1575462	20	3.0	20	85	5	75	23	20	20	35	1.96
1575414--1575500	41	2.2	40	87	2	120	21	19	20	37	1.94
1575414--1575500	20	4.3	20	76	5	95	21	19	20	37	1.94
1575497--1575542	21	2.2	21	84	0	56	36	15	28	19	1.92
1580780--1580838	27	2.1	29	87	9	86	10	13	0	76	1.02
1581490--1581524	4	8.8	4	93	0	61	0	20	0	80	0.72
1581488--1581534	8	5.8	8	89	2	58	2	17	0	80	0.80
1581522--1581561	17	2.3	18	86	4	64	20	0	0	80	0.72
1583402--1583439	16	2.4	16	95	0	67	28	13	28	28	1.94
1588150--1588207	20	2.7	21	84	10	73	22	24	17	36	1.95
1597355--1597388	18	1.9	18	88	5	52	26	23	0	50	1.50
1619695--1619734	21	1.9	21	85	10	55	35	10	2	52	1.48
1622929--1623152	96	2.3	95	85	3	290	33	13	24	29	1.93
1623489--1624175	58	11.8	58	92	2	954	35	13	20	30	1.91
1626269--1626316	21	2.3	21	92	0	78	18	20	31	29	1.97
1626766--1626837	32	2.3	31	81	9	92	54	2	11	31	1.50
1632392--1632451	30	2.0	30	90	0	93	41	6	11	40	1.68
1634929--1634958	10	3.0	10	95	0	51	30	10	46	13	1.75
1637998--1638099	22	4.7	22	85	9	129	21	23	30	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1639003--1639044	21	2.0	21	100	0	84	38	19	4	38	1.73
1641982--1642202	117	1.9	118	81	6	270	29	14	8	47	1.73
1642210--1642237	12	2.3	12	100	0	56	53	0	7	39	1.28
1648114--1648152	18	2.2	18	90	0	60	25	7	17	48	1.74
1648143--1648185	20	2.2	20	83	8	52	23	2	16	58	1.50
1650597--1650772	94	1.9	96	84	4	241	38	14	19	27	1.91
1651098--1651413	55	5.7	55	93	0	515	37	9	18	34	1.83
1651098--1651413	111	2.9	109	93	2	524	37	9	18	34	1.83
1655032--1655082	26	2.0	26	96	0	93	25	9	15	49	1.75
1655268--1655316	13	3.2	16	78	18	52	20	10	8	61	1.53
1664284--1664363	41	1.9	42	82	2	99	22	20	21	36	1.95
1665001--1665099	42	2.4	41	82	1	126	27	16	23	33	1.95
1664573--1665169	259	2.3	257	83	4	723	34	14	16	35	1.89
1665181--1665233	18	3.0	18	78	8	56	75	0	15	9	1.04
1674749--1675016	144	1.9	145	91	2	441	36	18	11	33	1.87
1694950--1694987	18	2.1	18	95	0	67	68	5	13	13	1.37
1697595--1697662	29	2.3	29	94	0	118	2	29	7	60	1.39
1703738--1703774	18	2.1	18	90	10	58	10	29	0	59	1.31
1703735--1703782	25	2.0	24	88	12	71	10	31	0	58	1.32
1704121--1704158	20	1.9	20	88	0	58	36	2	23	36	1.69
1704568--1705040	164	2.9	164	85	3	630	27	16	17	38	1.91
1704568--1705039	55	8.6	55	86	3	596	27	16	18	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1711446--1711659	55	3.9	55	83	3	261	28	15	16	39	1.89
1713869--1713907	21	2.0	19	85	14	53	69	0	10	20	1.17
1715661--1715695	17	2.0	17	88	5	52	20	8	28	42	1.81
1718140--1718201	29	2.1	29	83	16	76	8	16	3	72	1.21
1721384--1721416	2	16.5	2	100	0	66	51	0	0	48	1.00
1728855--1728905	26	2.0	26	92	0	84	21	13	29	35	1.92
1730399--1730451	25	2.1	25	96	0	97	24	15	28	32	1.95
1735139--1735195	23	2.5	23	77	11	64	22	17	15	43	1.87
1748874--1748934	30	2.1	30	85	8	83	18	3	21	57	1.54
1753079--1753110	16	2.0	16	93	0	55	46	31	3	18	1.65
1754366--1754436	32	2.2	32	80	2	81	28	12	16	42	1.85
1754522--1754605	33	2.5	33	81	9	89	28	7	15	48	1.71
1754389--1754605	34	6.5	32	71	13	100	28	11	15	43	1.82
1757600--1757645	21	2.2	21	100	0	92	47	13	0	39	1.42
1758050--1758078	2	15.0	2	92	7	51	48	0	0	51	1.00
1763106--1763130	11	2.3	11	100	0	50	36	0	0	64	0.94
1763220--1763250	15	2.1	15	93	0	53	45	0	0	54	0.99
1763475--1763530	27	2.1	27	96	0	103	28	16	12	42	1.84
1764330--1764794	226	2.1	225	84	4	598	40	12	13	33	1.82
1765466--1765504	20	2.0	20	90	5	62	41	10	7	41	1.68
1764937--1765672	202	3.7	198	83	3	856	34	12	12	39	1.82
1765792--1765836	22	2.0	23	87	8	67	28	4	8	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1766133--1766166	18	1.9	18	88	5	52	55	17	17	8	1.66
1766871--1766928	20	2.9	20	84	0	80	34	10	15	39	1.81
1766871--1766944	20	3.7	19	81	3	76	32	10	14	41	1.81
1766872--1766950	40	2.0	40	85	5	106	31	13	13	40	1.85
1767371--1767531	82	2.0	83	88	1	243	16	17	14	52	1.75
1768035--1768068	17	2.0	17	100	0	68	29	5	52	11	1.61
1769873--1769940	20	3.7	19	69	25	56	48	16	4	30	1.65
1769842--1769941	34	2.9	35	89	3	139	46	14	6	34	1.69
1772292--1772338	22	2.1	22	88	0	67	29	31	14	23	1.95
1774453--1774567	35	3.3	35	89	3	169	46	20	3	30	1.67
1774501--1774561	21	3.2	20	65	29	53	44	21	1	32	1.62
1782247--1782289	20	2.3	19	80	11	52	39	32	0	27	1.57
1788869--1788906	20	1.9	20	94	0	67	15	34	23	26	1.95
1800199--1800223	11	2.3	11	100	0	50	16	36	8	40	1.77
1801752--1801799	19	2.5	20	82	3	53	41	12	8	37	1.73
1802641--1802710	34	2.1	34	100	0	140	52	2	5	38	1.40
1804270--1804294	4	6.2	4	100	0	50	24	0	0	76	0.80
1804257--1804781	138	3.8	138	86	3	673	23	13	14	48	1.80
1804999--1805042	19	2.3	18	81	11	52	15	4	2	77	1.04
1808908--1809010	10	10.3	9	71	22	73	74	0	22	2	0.95
1808931--1809036	7	14.9	7	72	16	67	75	0	20	2	0.99
1808949--1808998	26	1.9	26	83	0	64	76	0	22	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1808941--1809007	34	2.0	34	82	5	82	76	0	22	1	0.87
1809653--1809733	28	2.9	28	98	0	153	41	34	3	19	1.69
1809675--1809724	15	3.5	15	72	10	59	48	26	4	22	1.68
1810130--1810209	3	26.3	3	84	2	106	38	1	0	60	1.05
1812446--1812613	66	2.5	66	92	0	264	25	16	20	37	1.93
1814748--1814783	14	2.6	14	90	0	54	19	5	5	69	1.29
1816837--1816981	72	2.0	73	89	1	220	24	20	19	35	1.95
1819938--1820099	54	3.0	54	92	0	261	35	13	25	25	1.93
1820467--1820675	22	9.5	22	94	1	339	33	19	12	34	1.90
1821262--1821369	32	3.4	32	100	0	216	32	12	20	35	1.89
1822584--1822610	2	13.5	2	100	0	54	51	0	0	48	1.00
1822862--1822927	23	2.9	23	75	6	55	34	19	24	21	1.96
1822937--1823029	21	4.4	21	71	10	73	40	20	13	24	1.89
1828100--1828158	23	2.6	23	83	0	73	32	22	27	18	1.97
1828093--1828159	23	2.9	23	79	2	71	32	20	25	20	1.97
1830126--1830174	19	2.6	19	86	0	71	32	10	30	26	1.89
1830163--1830216	22	2.6	20	86	11	81	31	14	27	25	1.95
1830633--1830827	45	4.3	45	88	0	174	37	9	22	30	1.86
1830667--1830995	90	3.7	90	80	4	351	39	10	19	30	1.85
1830712--1830995	45	6.3	45	84	4	331	40	10	19	29	1.85
1830712--1830967	135	1.9	135	87	3	381	40	11	19	28	1.87
1832818--1832843	13	2.0	13	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1833965--1833992	2	14.0	2	100	0	56	50	0	0	50	1.00
1834484--1834554	2	36.0	2	97	2	135	50	0	0	49	1.00
1835164--1835221	13	4.1	13	74	20	53	29	5	8	56	1.51
1835168--1835227	31	1.9	31	96	0	111	30	5	8	56	1.50
1836300--1836367	5	13.8	5	81	3	84	75	0	2	22	0.94
1836300--1836367	20	3.5	20	89	2	102	75	0	2	22	0.94
1837012--1837105	28	3.4	28	82	2	118	37	3	7	52	1.46
1850550--1850594	21	2.1	21	84	8	56	77	2	17	2	0.97
1855082--1855420	91	3.7	90	87	3	473	38	17	20	23	1.93
1855082--1855418	182	1.9	182	90	2	543	38	17	20	22	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26