genome.fa.s2647.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002647.1 Hibiscus syriacus cultivar Beakdansim tig00005406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7027529

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  6  of  26  ( 3011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191979--1192040	32	2.0	31	84	9	81	19	9	11	59	1.58
1193465--1193533	28	2.5	28	85	0	102	73	5	17	2	1.15
1193467--1193530	14	4.8	13	78	12	67	75	6	17	1	1.09
1193526--1193554	15	1.9	15	100	0	58	75	0	17	6	1.01
1193526--1193595	18	4.1	17	82	10	81	74	2	17	5	1.14
1195052--1195326	130	2.1	130	82	2	338	26	30	17	25	1.98
1195301--1195351	25	2.0	25	92	0	84	27	35	17	19	1.94
1195171--1195481	155	2.0	155	85	1	426	26	31	18	24	1.97
1195326--1195597	42	6.5	39	67	18	156	23	33	19	23	1.97
1195326--1195766	211	2.1	213	85	1	609	25	32	18	23	1.97
1195450--1195627	82	2.2	81	86	1	248	23	34	17	24	1.96
1197506--1197633	29	4.3	30	77	7	118	18	14	10	56	1.67
1206088--1206133	20	2.2	21	84	3	58	26	8	26	39	1.85
1212122--1212160	18	2.1	19	90	9	62	48	20	5	25	1.70
1219404--1219475	30	2.6	27	86	6	90	40	11	2	45	1.54
1219514--1219575	31	2.0	31	87	0	88	53	12	1	32	1.49
1221543--1221580	18	2.2	18	85	4	51	21	10	7	60	1.54
1223772--1223952	39	4.5	40	82	5	206	50	14	4	29	1.64
1223740--1223913	82	2.1	83	91	1	278	50	16	6	26	1.70
1225908--1225932	3	8.3	3	100	0	50	32	0	0	68	0.90
1229147--1229212	33	2.0	33	93	0	114	33	39	3	24	1.71
1232656--1232718	33	1.9	33	90	0	99	26	20	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1245593--1245875	120	2.4	121	86	3	394	35	16	12	35	1.86
1250263--1250379	57	2.1	56	88	4	173	41	2	12	42	1.57
1250263--1250379	56	2.1	57	88	4	175	41	2	12	42	1.57
1252342--1252387	17	2.7	17	77	19	51	78	0	15	6	0.95
1253409--1253444	17	2.1	17	94	0	63	25	0	36	38	1.56
1260046--1260097	21	2.5	21	81	3	61	38	19	25	17	1.93
1260086--1260199	20	5.7	20	81	6	104	31	25	17	25	1.97
1260083--1260199	61	1.9	61	83	0	153	33	24	17	24	1.96
1260718--1260784	19	3.5	19	85	2	89	47	25	16	10	1.78
1260780--1260945	20	9.1	19	70	16	109	13	22	21	42	1.87
1260789--1260845	19	2.9	19	84	5	78	14	15	21	49	1.80
1260833--1260920	33	2.7	32	86	8	115	12	26	23	37	1.90
1262947--1263069	42	2.9	42	80	4	106	24	34	17	23	1.95
1264428--1264463	14	2.6	14	90	0	54	27	0	27	44	1.55
1264602--1264646	19	2.3	20	81	7	58	44	20	17	17	1.87
1264642--1264792	19	8.7	19	63	21	71	15	21	20	42	1.89
1264646--1264772	33	3.9	32	86	8	184	14	22	19	43	1.88
1264639--1264771	66	2.0	66	95	0	239	16	21	19	42	1.89
1267065--1267089	12	2.1	12	100	0	50	0	28	0	72	0.86
1267264--1267317	24	2.2	24	87	6	74	40	20	14	24	1.90
1267280--1267331	24	2.2	24	82	0	59	38	21	15	25	1.92
1268377--1268433	20	2.8	20	91	0	87	38	21	22	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1268436--1268484	19	2.6	19	100	0	98	14	20	16	48	1.80
1268601--1268637	14	2.6	14	86	0	56	48	21	0	29	1.50
1270507--1270573	19	3.5	19	83	4	89	37	23	23	14	1.93
1270562--1270619	14	3.9	14	79	16	71	48	25	17	8	1.75
1270546--1270624	32	2.4	33	95	2	142	46	24	18	10	1.80
1270653--1270710	14	3.9	14	79	16	71	10	17	24	48	1.78
1270636--1270726	32	2.8	33	94	3	166	12	18	21	47	1.81
1270711--1270754	20	2.2	20	88	4	63	18	25	20	36	1.95
1271247--1271291	18	2.5	18	88	0	72	13	15	44	26	1.83
1272611--1272648	20	1.9	20	88	0	58	50	21	15	13	1.78
1272912--1272955	22	2.0	22	90	0	70	20	15	43	20	1.88
1273143--1273236	20	4.7	20	80	2	89	23	18	24	34	1.96
1273123--1273237	20	5.7	20	78	5	88	23	17	23	35	1.95
1273226--1273318	20	4.5	21	75	4	91	18	24	17	39	1.91
1273165--1273299	41	3.3	41	81	4	130	20	21	20	38	1.94
1273226--1273318	41	2.3	41	98	0	177	18	24	17	39	1.91
1278584--1278610	2	13.5	2	100	0	54	0	0	48	51	1.00
1282528--1282552	3	8.3	3	100	0	50	36	0	32	32	1.58
1282551--1282582	3	10.7	3	100	0	64	65	0	0	34	0.93
1282791--1283193	138	2.9	138	88	1	576	24	16	29	29	1.97
1283325--1283447	37	3.3	37	80	6	149	38	16	18	26	1.92
1290691--1290892	95	2.1	95	82	3	255	40	12	20	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1291313--1291432	45	2.7	45	90	2	197	42	15	20	21	1.89
1292771--1293253	81	6.0	81	91	0	745	37	12	19	30	1.89
1293286--1293380	49	1.9	49	82	4	120	34	15	25	24	1.95
1293285--1293394	49	2.2	47	79	9	112	35	14	25	24	1.93
1294143--1294358	45	4.8	45	86	1	261	40	12	19	26	1.88
1300476--1300533	21	2.8	21	91	0	89	34	8	20	36	1.84
1300537--1300738	95	2.1	95	84	1	262	39	12	20	27	1.88
1301159--1301395	45	5.2	45	86	1	330	42	13	20	23	1.88
1305996--1306039	3	15.0	3	90	4	72	63	0	0	36	0.95
1308985--1309073	41	2.2	42	83	6	119	31	14	20	33	1.93
1308891--1309073	82	2.2	82	77	7	183	31	15	20	32	1.94
1309723--1309775	22	2.4	22	93	0	88	39	7	18	33	1.79
1316084--1316144	23	2.9	19	85	11	68	21	34	26	18	1.96
1316127--1316166	21	1.9	21	89	0	62	25	40	25	10	1.86
1318881--1318931	20	2.5	20	93	0	84	21	35	23	19	1.96
1321050--1321086	18	2.1	18	100	0	74	24	43	16	16	1.87
1323033--1323158	39	3.2	39	98	0	243	46	7	10	35	1.67
1323470--1323506	18	2.1	17	95	5	65	8	5	16	70	1.30
1330074--1330298	44	5.2	43	77	2	193	32	22	16	28	1.96
1331082--1331127	21	2.2	21	84	7	58	19	13	23	43	1.86
1331454--1331487	16	2.1	16	88	0	50	8	14	29	47	1.75
1340926--1340966	21	1.9	22	90	5	66	24	19	17	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1345993--1346024	14	2.1	16	88	11	50	15	15	18	50	1.79
1347899--1347957	3	19.3	3	96	3	109	66	0	33	0	0.92
1349600--1349699	44	2.3	44	92	1	166	46	7	17	30	1.74
1349912--1350008	21	4.6	21	76	0	86	36	14	17	31	1.90
1352937--1352991	21	2.6	21	76	0	65	40	16	12	30	1.86
1354178--1354206	11	2.6	11	100	0	58	51	10	37	0	1.36
1355796--1355873	23	3.3	25	73	21	71	56	3	1	38	1.26
1357378--1357804	185	2.3	182	82	6	490	26	20	17	35	1.95
1357862--1358136	20	13.8	20	89	0	379	32	24	20	22	1.98
1366293--1366328	18	2.0	18	88	0	54	8	13	41	36	1.75
1370495--1370538	8	5.5	8	80	20	56	22	0	4	72	1.02
1370495--1370538	17	2.8	16	80	19	56	22	0	4	72	1.02
1370493--1370546	25	2.3	23	80	6	63	24	3	3	68	1.22
1371034--1371060	3	9.0	3	100	0	54	33	0	0	66	0.92
1372310--1372427	20	5.9	20	80	4	130	28	22	19	28	1.98
1372606--1372648	22	2.0	22	95	0	77	25	39	13	20	1.90
1373033--1373085	20	2.7	20	84	0	70	18	18	24	37	1.94
1374817--1374867	18	2.8	18	96	0	93	33	17	7	41	1.79
1375014--1375061	20	2.4	20	92	0	78	33	27	20	18	1.96
1375104--1375170	20	3.5	19	84	8	82	19	19	25	35	1.95
1377161--1377222	14	4.3	14	79	6	70	37	0	16	46	1.47
1377163--1377217	29	1.9	29	85	3	76	34	0	18	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377321--1377374	20	2.7	20	88	5	65	42	25	18	12	1.86
1377367--1377553	20	9.7	20	80	7	199	25	18	22	33	1.97
1380007--1380060	24	2.2	24	93	0	90	40	20	18	20	1.91
1380882--1380994	20	5.6	20	85	6	113	28	20	19	31	1.97
1380957--1381001	22	2.0	22	95	0	81	33	17	24	24	1.96
1385610--1385661	4	12.5	4	84	8	59	67	0	1	30	1.02
1385610--1385661	17	3.1	17	83	2	52	67	0	1	30	1.02
1386773--1386937	83	2.0	82	91	1	267	40	12	11	36	1.79
1389308--1389359	26	2.0	27	88	3	79	1	30	15	51	1.54
1389743--1389778	3	11.7	3	94	5	63	36	0	0	63	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26