genome.fa.s2647.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002647.1 Hibiscus syriacus cultivar Beakdansim tig00005406_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7027529

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   

This is table  5  of  26  ( 3011 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
897682--897723	22	1.9	23	85	9	61	26	4	2	66	1.23
898595--898639	19	2.4	19	79	17	58	8	11	0	80	0.92
903119--903373	43	6.0	43	85	2	307	23	22	19	34	1.96
903122--903366	127	1.9	128	85	2	341	23	22	19	35	1.96
910648--910688	20	2.0	20	85	0	55	36	9	17	36	1.82
912369--912398	13	2.2	14	94	5	53	30	0	23	46	1.52
915893--915926	15	2.2	16	89	5	52	26	8	0	64	1.22
916715--916877	71	2.2	77	81	11	198	43	7	12	36	1.71
916758--916973	77	2.9	75	78	7	215	43	7	14	34	1.74
919005--919086	29	2.8	29	92	1	128	32	14	10	41	1.81
923612--923693	29	2.8	29	92	1	128	32	14	10	41	1.81
924034--924090	24	2.4	24	90	0	87	38	17	17	26	1.92
931325--931378	20	2.7	20	100	0	108	29	11	29	29	1.91
932269--932315	2	23.5	2	95	0	85	48	0	0	51	1.00
943252--943279	3	9.3	3	100	0	56	0	0	32	67	0.91
949269--949433	78	2.1	78	84	4	208	36	9	18	35	1.83
949222--949920	264	2.7	263	86	5	934	40	8	16	33	1.80
951115--951184	34	2.1	32	86	5	95	21	30	15	32	1.94
951463--951504	21	2.0	21	95	0	75	26	28	21	23	1.99
951669--951728	29	2.0	31	90	6	97	41	16	6	35	1.75
952266--952508	99	2.5	97	86	7	341	40	18	8	32	1.81
954047--954096	7	7.4	7	84	8	68	20	30	32	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954051--954096	13	3.5	13	90	3	65	19	30	32	17	1.95
954047--954096	20	2.5	20	90	6	75	20	30	32	18	1.96
954086--954124	17	2.4	17	91	4	62	20	23	38	17	1.93
954119--954171	19	2.8	19	100	0	106	26	30	26	16	1.97
954121--954173	10	5.5	10	82	8	74	30	30	22	16	1.96
961287--961323	7	5.4	7	87	6	58	27	29	27	16	1.97
961287--961323	13	2.7	14	87	8	58	27	29	27	16	1.97
961313--961353	17	2.4	17	91	0	64	17	24	39	19	1.92
961349--961456	9	11.1	10	74	13	91	29	28	22	19	1.98
961366--961440	29	2.6	30	71	12	57	32	26	22	18	1.97
961408--961450	11	4.2	10	80	14	52	39	20	18	20	1.93
961347--961456	19	5.7	19	89	1	130	29	28	23	19	1.98
969917--970082	90	1.9	89	96	1	305	35	11	6	46	1.66
969920--970104	90	2.1	90	89	2	282	37	9	7	45	1.64
974619--974668	24	2.1	24	92	0	82	20	20	20	40	1.92
981627--981742	23	5.1	23	76	11	98	17	23	25	34	1.96
981627--981720	23	4.2	22	81	9	102	17	22	26	34	1.96
986041--986099	30	2.0	30	93	0	100	52	1	5	40	1.33
991024--991074	2	25.5	2	100	0	102	49	0	0	50	1.00
992821--993638	101	8.1	101	75	6	676	39	12	11	35	1.80
992844--993241	203	2.0	202	81	5	464	40	13	11	35	1.80
993651--993990	101	3.4	99	75	8	303	37	14	10	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993487--993802	164	1.9	162	81	5	377	38	12	11	38	1.78
994960--995008	23	2.1	23	85	7	64	48	10	8	32	1.66
1001705--1001765	23	2.8	23	75	7	65	22	34	24	18	1.96
1006398--1006475	21	3.7	21	80	10	95	39	20	14	25	1.90
1023409--1023524	21	5.5	21	70	10	92	37	24	16	21	1.93
1025972--1025997	12	2.2	12	100	0	52	53	0	0	46	1.00
1026994--1027185	102	1.9	102	86	6	273	39	9	12	38	1.77
1029888--1029950	23	2.7	23	90	0	99	28	25	22	23	1.99
1029888--1029961	23	3.2	22	79	11	78	25	25	24	24	2.00
1032064--1032112	23	2.1	23	88	7	73	57	12	2	28	1.46
1039061--1039092	16	2.0	16	100	0	64	25	12	43	18	1.85
1042241--1042289	23	2.1	23	85	7	64	57	14	2	26	1.48
1046639--1046670	2	15.5	2	93	6	55	46	3	0	50	1.17
1047272--1047317	20	2.2	20	85	11	58	30	10	28	30	1.91
1047496--1050378	577	5.0	577	94	0	4965	36	9	18	35	1.83
1050448--1050549	23	4.4	22	74	9	69	25	19	21	33	1.97
1050487--1050545	24	2.5	24	78	5	68	32	18	16	32	1.94
1051225--1051258	17	2.0	17	100	0	68	35	17	29	17	1.93
1056134--1056239	38	2.8	38	82	0	140	33	8	20	36	1.83
1059425--1059490	32	2.1	32	100	0	132	37	9	27	25	1.86
1061593--1061662	17	4.1	17	81	5	79	37	10	14	38	1.79
1063378--1063428	14	3.6	14	86	0	66	13	15	9	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064270--1064307	20	1.9	20	88	0	58	52	5	2	39	1.38
1064907--1064974	33	2.1	31	84	10	84	25	30	13	30	1.93
1065394--1065425	13	2.5	13	94	0	55	21	21	37	18	1.94
1065662--1065710	21	2.4	20	80	12	64	48	6	12	32	1.65
1068866--1069063	65	3.1	63	80	12	224	27	18	22	31	1.97
1075763--1075820	28	2.0	28	83	9	73	18	3	22	55	1.58
1076439--1076646	65	3.2	64	84	8	235	31	24	18	25	1.97
1080882--1080933	24	2.2	24	85	0	68	57	9	5	26	1.53
1080891--1080948	24	2.4	24	97	0	107	58	3	8	29	1.44
1080908--1080981	20	3.6	19	75	17	60	54	4	9	32	1.52
1082391--1082466	22	3.5	22	90	0	125	31	25	14	28	1.95
1091157--1091360	81	2.5	81	80	0	228	29	24	9	36	1.87
1091652--1092236	59	9.9	59	92	0	954	35	20	11	32	1.88
1093643--1093714	20	3.8	21	74	23	79	25	29	19	26	1.99
1093644--1093748	36	3.0	35	87	2	140	24	24	19	31	1.98
1094096--1094165	33	2.1	33	84	5	88	32	15	25	25	1.95
1096828--1096882	18	2.9	18	80	15	65	23	9	14	52	1.70
1097109--1097164	20	3.0	20	76	23	68	25	32	17	25	1.97
1097212--1097257	15	3.1	15	90	0	65	32	23	15	28	1.95
1097214--1097263	15	3.3	15	88	0	64	32	20	16	32	1.94
1101037--1101070	17	2.0	17	88	0	50	29	0	23	47	1.52
1103417--1104120	200	3.5	198	83	5	731	39	14	15	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1104163--1104283	65	1.9	64	92	1	206	31	12	12	43	1.79
1107117--1107192	39	1.9	39	89	5	118	21	14	13	51	1.76
1115839--1115873	12	2.9	12	95	0	61	68	11	2	17	1.31
1117090--1117167	33	2.4	32	83	12	88	73	5	6	15	1.22
1117117--1117188	5	13.2	5	73	15	54	73	1	6	18	1.12
1117116--1117186	22	3.2	22	71	13	65	74	1	7	16	1.10
1117118--1117186	33	2.3	31	83	16	83	73	1	7	17	1.12
1117347--1117393	22	2.2	21	82	17	53	70	4	0	25	1.05
1117501--1117587	34	2.6	34	79	16	101	78	3	3	14	1.02
1117532--1117584	28	1.9	28	84	3	72	77	1	1	18	0.96
1117539--1117658	54	2.2	54	73	10	120	75	3	6	15	1.15
1117500--1117620	30	3.9	28	74	18	82	76	5	5	12	1.15
1117619--1117714	12	8.1	12	78	13	74	68	0	3	28	1.04
1117664--1117714	3	17.0	3	100	0	102	66	0	0	33	0.92
1118545--1118593	25	2.0	25	95	0	89	10	24	40	24	1.86
1131279--1131318	13	3.0	13	81	3	53	40	10	7	42	1.67
1136614--1136679	31	2.2	31	79	20	77	33	19	6	40	1.76
1138861--1139039	64	2.8	64	80	9	179	30	17	22	29	1.97
1142469--1142496	14	2.0	14	100	0	56	21	7	14	57	1.61
1145858--1145888	15	2.1	15	93	0	53	6	45	6	41	1.55
1147642--1147821	64	2.8	64	76	15	183	30	16	23	29	1.96
1147644--1147821	65	2.8	63	78	9	191	29	16	23	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1151556--1151624	31	2.3	30	82	9	86	33	17	2	46	1.63
1154560--1154587	14	2.0	14	100	0	56	35	21	28	14	1.92
1165798--1165883	32	2.7	32	79	0	109	33	18	10	37	1.85
1166959--1166996	20	1.9	20	88	0	58	31	21	15	31	1.94
1172596--1172645	20	2.5	19	75	9	55	20	18	24	38	1.93
1173029--1173066	18	2.2	18	90	4	60	42	23	2	31	1.68
1173727--1173781	20	2.7	20	88	11	76	27	21	20	30	1.98
1179642--1179724	42	1.9	42	82	4	103	30	19	13	37	1.90
1182030--1182067	3	12.0	3	89	10	58	63	0	0	36	0.95
1182206--1182403	29	6.8	29	84	2	254	35	4	8	52	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26