Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007744.1 Hibiscus syriacus cultivar Beakdansim tig00110007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4276731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1862 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3981725--3981767
17
2.7
15
86
10
59
18
27
0
53
1.45
3985773--3986128
172
2.1
173
97
1
669
39
15
20
23
1.91
3991017--3991069
23
2.2
24
90
3
81
9
16
11
62
1.54
3997146--3997179
17
2.0
17
94
0
59
32
32
0
35
1.58
4017015--4017066
21
2.6
21
90
6
81
34
13
5
46
1.67
4025401--4025480
35
2.2
37
86
4
110
27
3
37
31
1.74
4029473--4029552
35
2.2
37
88
4
119
27
3
38
30
1.74
4047598--4047668
17
4.2
17
83
0
88
40
9
14
35
1.79
4047598--4047668
34
2.1
34
86
0
97
40
9
14
35
1.79
4048416--4048560
61
2.4
61
81
1
175
32
27
15
24
1.96
4059766--4060008
121
2.0
121
100
0
486
24
17
21
36
1.94
4069144--4069203
24
2.6
23
81
7
77
8
18
10
63
1.50
4069151--4069203
23
2.2
24
90
3
81
9
16
11
62
1.54
4072531--4072570
21
1.9
21
90
10
64
20
27
5
47
1.70
4072525--4072576
21
2.7
19
81
18
63
19
28
3
48
1.66
4074955--4074984
15
2.0
15
100
0
60
46
13
6
33
1.69
4076459--4076499
20
2.1
19
86
4
55
34
7
7
51
1.58
4080097--4080122
13
2.0
13
100
0
52
23
38
0
38
1.55
4080556--4080588
15
2.1
16
94
5
59
84
6
9
0
0.76
4093464--4093767
142
2.1
142
96
0
565
27
14
19
38
1.90
4096828--4096879
16
3.3
15
77
17
52
17
15
0
67
1.24
4101427--4101478
2
26.5
2
96
3
97
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4101935--4101960
13
2.0
13
100
0
52
38
0
38
23
1.55
4102303--4102350
20
2.5
20
86
3
62
43
8
14
33
1.75
4102677--4102722
23
2.0
23
83
8
58
36
6
8
47
1.60
4104288--4104339
8
6.2
8
80
14
61
75
0
23
1
0.91
4104295--4104332
5
7.4
5
85
11
51
78
0
18
2
0.86
4104295--4104335
21
2.0
21
85
9
57
78
0
19
2
0.87
4107221--4107266
23
2.0
23
83
8
58
36
6
8
47
1.60
4112318--4112360
20
2.2
20
87
4
61
34
9
6
48
1.62
4112886--4112918
15
2.1
16
88
5
50
21
21
0
57
1.41
4118213--4118272
17
3.6
16
80
8
66
75
5
16
3
1.12
4118454--4118486
16
2.1
16
88
11
50
12
33
0
54
1.37
4122841--4122891
21
2.5
19
75
12
57
25
11
9
52
1.68
4123721--4123768
25
1.9
25
87
8
71
0
12
8
79
0.94
4123722--4123765
19
2.3
20
80
11
56
0
13
6
79
0.92
4130193--4130291
46
2.2
44
84
7
137
60
3
19
17
1.48
4131198--4131254
30
1.9
30
88
0
87
22
31
14
31
1.93
4134555--4134626
24
2.8
27
67
26
73
26
19
15
38
1.91
4137906--4137954
23
2.2
23
88
3
73
75
8
6
10
1.18
4145374--4145402
15
2.0
15
93
6
51
75
3
20
0
0.94
4148110--4148161
19
2.6
21
90
6
81
46
5
13
34
1.67
4148968--4149004
17
2.1
18
90
5
58
37
5
18
37
1.74
4151220--4151279
25
2.4
25
81
10
77
5
15
3
76
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4152741--4152801
30
2.0
30
100
0
122
19
29
13
37
1.90
4174954--4174984
10
3.0
10
90
9
53
90
0
9
0
0.46
4174954--4174984
11
2.9
11
95
4
55
90
0
9
0
0.46
4177034--4177079
23
2.0
23
83
8
58
36
6
8
47
1.60
4178681--4178728
17
2.9
16
87
6
60
72
6
14
6
1.24
4178699--4178756
29
2.0
28
84
15
75
72
3
13
10
1.24
4181627--4181672
23
2.0
23
83
8
58
36
6
8
47
1.60
4193551--4193589
15
2.5
16
83
8
53
61
2
20
15
1.45
4199305--4199358
23
2.3
24
83
3
74
61
12
16
9
1.56
4228077--4228116
14
2.8
14
84
3
53
2
12
5
80
0.98
4228071--4228115
20
2.2
21
84
11
67
2
15
2
80
0.92
4241437--4241490
23
2.3
24
87
3
83
62
11
16
9
1.52
4241437--4241496
24
2.6
23
81
7
77
63
10
18
8
1.50
4245704--4245757
23
2.3
24
87
3
83
62
11
16
9
1.52
4245704--4245763
24
2.6
23
81
7
77
63
10
18
8
1.50
4249960--4250013
23
2.3
24
87
3
83
62
11
16
9
1.52
4249960--4250019
24
2.6
23
81
7
77
63
10
18
8
1.50
4255390--4255429
15
2.7
15
85
11
55
57
0
25
17
1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!