genome.fa.s7744.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007744.1 Hibiscus syriacus cultivar Beakdansim tig00110007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4276731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  8  of  16  ( 1862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759547--1759579	15	2.2	15	100	0	66	24	24	36	15	1.93
1759576--1759610	18	1.9	18	100	0	70	11	11	57	20	1.64
1761734--1761785	24	2.2	24	82	0	59	50	17	11	21	1.77
1761754--1761871	24	4.9	24	88	6	159	40	19	17	22	1.91
1761757--1761888	48	2.7	47	80	11	151	42	18	16	21	1.89
1764317--1764348	7	4.4	7	92	7	55	25	28	34	12	1.92
1764318--1764350	15	2.2	15	100	0	66	24	24	36	15	1.93
1764346--1764382	18	2.1	18	100	0	74	10	18	54	16	1.71
1764340--1764418	31	2.5	31	81	0	95	15	18	46	18	1.84
1764325--1764368	13	3.2	13	83	6	52	18	20	45	15	1.85
1766502--1766553	24	2.2	24	82	0	59	50	17	11	21	1.77
1766522--1766639	24	4.9	24	88	6	159	40	19	17	22	1.91
1766525--1766656	48	2.7	47	80	11	151	42	18	16	21	1.89
1769113--1769189	18	4.6	18	70	15	74	12	19	49	18	1.79
1769107--1769185	31	2.5	31	85	0	113	15	20	46	17	1.83
1769090--1769135	13	3.4	13	82	11	65	17	23	43	15	1.87
1769084--1769131	8	6.5	8	81	18	68	20	25	39	14	1.91
1771787--1771845	26	2.3	26	88	2	84	25	11	27	35	1.91
1773640--1773703	17	3.7	17	89	2	92	34	9	29	26	1.88
1773690--1773774	44	2.1	38	81	14	107	25	16	23	34	1.95
1778906--1779258	105	3.4	105	89	0	526	24	20	17	38	1.93
1780295--1780488	52	3.8	52	78	2	203	41	18	9	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1780554--1780732	74	2.4	75	81	6	193	39	8	19	31	1.83
1780705--1780818	36	3.2	35	80	7	122	38	13	19	28	1.89
1780945--1781318	37	10.8	37	66	18	194	43	9	16	30	1.80
1781069--1781127	18	3.0	21	62	23	56	45	10	15	28	1.78
1781182--1781307	66	1.9	67	86	3	184	42	8	15	32	1.78
1780955--1781318	103	3.5	103	92	0	613	44	9	15	29	1.79
1785164--1785241	6	13.0	6	83	0	102	47	16	16	19	1.83
1792723--1792762	21	1.9	21	94	0	71	10	35	32	22	1.87
1798481--1798521	21	2.0	21	95	0	73	9	31	31	26	1.89
1802745--1802778	16	2.2	16	89	5	52	23	0	38	38	1.55
1804533--1804803	35	7.7	35	76	2	249	36	19	19	25	1.95
1804538--1804803	70	3.8	70	79	1	282	36	19	18	25	1.95
1804548--1804812	105	2.5	104	81	6	277	37	18	19	24	1.94
1804548--1804837	70	4.1	70	74	4	210	36	18	18	26	1.94
1805502--1805543	20	2.1	20	83	16	52	57	11	0	30	1.35
1806117--1806256	23	6.1	22	81	8	163	30	24	20	24	1.99
1806117--1806256	46	3.0	46	92	2	228	30	24	20	24	1.99
1811533--1812780	134	9.4	134	75	8	952	31	19	18	30	1.96
1811532--1812763	265	4.6	264	79	5	1000	31	19	18	30	1.96
1811518--1812669	530	2.2	528	78	6	1163	31	19	19	30	1.96
1813535--1814142	90	6.8	90	80	3	557	42	16	17	22	1.88
1814104--1814700	38	15.0	38	72	15	388	39	16	19	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1813935--1814590	125	5.2	121	75	12	467	38	16	19	24	1.92
1813567--1814589	45	23.8	42	74	10	475	40	16	18	23	1.91
1813702--1814589	167	5.2	170	75	10	550	40	16	18	24	1.91
1813974--1814590	80	7.4	80	73	13	432	38	16	19	24	1.92
1814104--1814619	205	2.5	205	87	2	714	38	16	20	24	1.92
1813940--1814721	167	4.8	168	74	14	602	39	16	19	25	1.92
1813926--1814604	42	16.3	41	73	12	248	39	16	19	24	1.91
1815291--1815390	42	2.4	42	83	5	123	32	20	21	27	1.97
1815491--1815570	42	1.9	42	84	5	108	36	22	15	26	1.93
1815220--1815615	177	2.2	177	87	2	582	33	18	15	31	1.93
1825488--1825545	3	19.7	3	75	10	57	63	0	3	32	1.11
1825479--1825546	28	2.6	25	78	15	75	63	0	4	32	1.14
1825494--1825544	22	2.3	22	81	15	61	60	0	3	35	1.15
1827277--1827321	23	1.9	24	90	4	74	55	4	20	20	1.60
1832869--1832954	3	28.3	3	90	2	136	65	0	3	31	1.10
1833138--1834439	134	9.6	133	85	2	1480	31	18	19	29	1.96
1833242--1834428	401	3.0	402	87	1	1646	31	19	19	29	1.96
1833242--1834549	535	2.4	533	83	4	1339	31	19	19	29	1.96
1835036--1835444	45	9.2	45	77	8	308	41	18	17	23	1.90
1835036--1835444	88	4.6	87	77	8	353	41	18	17	23	1.90
1835001--1835444	133	3.3	135	76	9	376	40	18	16	23	1.90
1835239--1836153	118	7.7	115	76	10	663	39	17	17	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835372--1836155	38	20.0	38	76	9	677	39	17	17	26	1.91
1835371--1836155	118	6.7	114	76	9	670	39	17	17	26	1.91
1835372--1836190	80	10.4	79	78	7	722	38	17	17	26	1.92
1842963--1843017	3	18.3	3	77	7	58	61	3	5	29	1.35
1843351--1843391	21	1.9	22	85	5	57	26	17	24	31	1.97
1844509--1844862	131	2.7	131	85	3	473	37	16	11	34	1.85
1846911--1846945	3	11.7	3	87	0	52	62	2	2	31	1.24
1847090--1847118	14	2.1	14	100	0	58	24	0	34	41	1.55
1847189--1847529	133	2.6	133	85	0	441	29	17	21	31	1.96
1848648--1848680	11	3.2	11	87	12	52	18	0	0	81	0.68
1848674--1848735	21	2.9	21	83	11	74	8	19	0	72	1.09
1848688--1848716	13	2.2	13	100	0	58	6	20	0	72	1.07
1852127--1852194	17	3.9	18	78	19	65	75	4	17	2	1.10
1852457--1852482	11	2.4	11	100	0	52	23	11	11	53	1.69
1853318--1853373	30	1.9	29	82	7	69	33	14	16	35	1.88
1862026--1862071	20	2.3	20	85	14	60	26	10	8	54	1.64
1867303--1867447	70	2.1	70	98	1	283	40	17	19	22	1.92
1868075--1868109	16	2.2	16	100	0	70	42	5	0	51	1.25
1868640--1868771	45	2.9	45	82	4	158	32	21	5	40	1.75
1868914--1868980	33	2.0	33	97	0	125	29	25	17	26	1.98
1885436--1885496	32	1.9	32	83	6	79	32	11	22	32	1.90
1886998--1887036	20	2.0	20	89	0	60	30	33	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1887056--1887146	46	2.0	46	93	2	157	27	26	19	26	1.99
1897014--1897052	20	2.0	20	89	0	60	30	33	15	20	1.94
1897072--1897162	46	2.0	46	93	2	157	27	26	19	26	1.99
1904703--1904746	22	2.0	22	86	0	61	18	6	2	72	1.17
1905623--1905722	50	2.0	50	100	0	200	48	16	14	22	1.81
1906081--1906127	11	4.3	11	86	5	60	14	10	2	72	1.21
1907908--1908098	85	2.2	86	85	5	269	31	1	12	54	1.47
1910664--1910723	26	2.4	25	86	5	77	36	26	13	23	1.92
1912093--1912132	21	1.9	21	94	0	71	25	35	17	22	1.95
1917458--1917504	23	2.0	24	95	4	87	25	21	21	31	1.98
1920092--1920156	23	2.8	23	92	0	103	24	40	16	18	1.91
1922285--1922341	24	2.7	20	72	27	55	24	10	0	64	1.24
1922278--1922332	24	2.2	25	84	15	78	23	10	0	65	1.24
1927927--1927955	14	2.0	15	93	6	51	44	6	6	41	1.58
1944263--1944350	45	2.0	45	93	0	149	28	27	17	27	1.97
1952505--1952592	45	2.0	45	93	0	149	28	27	17	27	1.97
1954404--1955012	54	11.4	54	84	2	710	28	19	19	33	1.96
1960606--1960656	25	2.0	25	96	0	93	29	25	3	41	1.73
1969025--1969171	75	2.0	75	100	0	294	14	14	23	46	1.83
1975359--1975679	159	2.0	160	99	0	635	24	12	16	45	1.82
1982738--1982833	42	2.3	41	78	1	102	25	21	18	34	1.96
1982534--1982900	196	1.9	195	86	4	533	28	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1983281--1983377	42	2.3	42	80	5	108	22	21	22	32	1.98
1982905--1983452	257	2.1	257	89	1	810	32	16	17	34	1.92
1983460--1983497	11	3.5	11	82	10	51	68	0	21	10	1.19
1983914--1983956	20	2.2	20	86	0	59	37	34	18	9	1.83
1986034--1986242	105	2.0	103	93	5	359	30	17	20	32	1.95
1988775--1988843	8	8.4	8	71	17	52	1	17	2	78	0.95
1988776--1988842	13	4.9	13	80	8	80	1	17	2	77	0.97
1988783--1988835	28	1.9	27	88	11	81	1	18	3	75	1.05
1993053--1993088	18	2.0	18	100	0	72	27	16	0	55	1.42
1996129--1996163	14	2.5	14	100	0	70	40	8	8	42	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16