genome.fa.s7744.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007744.1 Hibiscus syriacus cultivar Beakdansim tig00110007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4276731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216757--216909	62	2.6	57	83	9	177	20	16	43	18	1.88
216724--216877	77	2.0	77	100	0	308	22	14	45	18	1.85
216732--216933	21	10.1	20	77	13	164	22	17	41	18	1.90
219034--219086	20	2.7	19	76	2	52	16	13	20	49	1.79
219559--219637	20	4.0	20	94	0	131	17	12	24	45	1.83
219631--219697	20	3.3	20	91	0	98	23	14	22	38	1.92
219569--219703	40	3.4	38	79	15	116	22	12	22	42	1.87
219693--219738	21	2.2	21	92	7	76	39	15	21	23	1.92
233582--233665	28	3.0	29	75	14	86	21	22	15	40	1.91
234386--234449	27	2.4	27	97	0	119	21	6	20	51	1.69
242146--242258	46	2.5	46	87	5	158	44	7	23	23	1.80
246506--246711	94	2.2	94	79	8	215	34	14	23	27	1.93
247050--247317	55	4.9	55	83	5	296	34	16	20	27	1.95
247086--247295	54	3.9	53	88	3	269	36	15	20	27	1.93
247086--247317	108	2.1	109	84	3	299	35	16	21	27	1.94
247565--247678	46	2.5	45	87	5	167	45	7	24	22	1.77
250640--250680	20	2.1	19	95	4	73	39	21	24	14	1.91
257682--257724	21	2.1	20	82	4	50	20	9	20	48	1.77
269251--269746	251	2.0	251	100	0	992	34	19	15	30	1.93
278133--278176	16	2.6	17	89	3	63	15	13	11	59	1.62
283484--283526	19	2.2	19	83	4	50	25	16	9	48	1.75
284154--284196	19	2.3	19	80	11	52	6	27	4	60	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285393--285448	20	2.8	20	91	2	85	19	28	8	42	1.81
285479--285511	11	3.0	11	90	0	57	18	30	9	42	1.81
285698--285732	3	11.7	3	100	0	70	31	0	0	68	0.90
287860--288225	131	2.8	129	81	6	411	32	10	16	40	1.83
292892--292921	5	5.8	5	96	4	51	0	16	0	83	0.65
295360--295403	21	2.1	21	95	0	79	25	20	25	29	1.99
295831--295931	48	2.1	48	86	0	139	37	24	4	32	1.77
298974--299020	20	2.2	22	88	7	71	29	14	10	44	1.79
299471--299582	41	2.7	41	74	14	122	33	23	14	29	1.94
299527--299729	83	2.5	83	86	0	282	30	21	15	32	1.94
299615--299734	41	2.9	39	72	15	98	27	22	17	32	1.96
306513--306556	18	2.4	18	100	0	88	31	15	6	45	1.73
311009--311098	36	2.4	39	80	9	98	35	4	3	56	1.36
311058--311130	20	3.4	21	73	14	60	32	6	2	57	1.39
311008--311131	3	40.7	3	69	15	58	33	5	3	57	1.38
311226--311286	30	2.0	30	100	0	122	27	0	13	59	1.35
312413--312523	40	2.7	41	78	2	125	27	12	19	39	1.88
312416--312554	41	3.4	41	79	1	154	28	12	19	40	1.87
312449--312626	41	4.4	40	72	16	132	31	17	15	35	1.91
322126--322520	56	7.1	56	94	1	668	34	18	9	37	1.84
322868--322926	19	2.9	20	82	9	75	27	25	16	30	1.97
328825--328865	20	2.0	20	85	0	55	41	19	2	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330252--330301	14	3.6	14	80	17	52	32	0	2	66	1.03
330252--330342	12	7.3	13	70	16	52	35	1	1	62	1.10
331132--331189	26	2.1	28	87	12	86	34	3	0	62	1.12
332045--332113	36	1.9	35	88	2	102	47	20	10	21	1.79
336070--336125	7	7.9	7	73	11	51	78	0	19	1	0.84
336059--336125	21	3.4	19	78	17	66	79	0	19	1	0.82
340221--340328	54	2.0	54	85	0	144	36	12	25	25	1.92
340693--340737	22	2.0	22	100	0	90	31	17	13	37	1.89
341251--341309	20	3.0	20	68	26	61	50	10	22	16	1.75
341103--341663	113	5.0	113	88	2	808	38	14	19	27	1.91
343458--343507	14	3.6	14	80	17	52	32	0	2	66	1.03
343691--343742	14	3.5	14	73	14	50	44	0	1	53	1.11
343835--343872	2	19.0	2	94	0	67	52	0	0	47	1.00
344271--344598	56	5.9	56	92	0	541	33	18	12	36	1.88
367903--367972	3	23.7	3	91	8	117	67	1	0	31	1.00
369774--369844	3	23.0	3	88	5	106	63	0	0	36	0.95
369978--370297	77	4.2	77	94	0	534	35	21	19	24	1.96
370177--370404	108	2.1	108	91	2	379	35	19	19	25	1.95
370246--370328	32	2.7	32	81	7	93	38	16	16	27	1.91
370100--370474	184	2.0	184	93	1	635	35	19	20	24	1.96
370285--370873	76	7.9	76	94	3	989	34	20	21	23	1.96
370285--370873	149	3.9	152	92	3	989	34	20	21	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370285--370873	222	2.6	224	92	3	999	34	20	21	23	1.96
371996--372225	118	1.9	120	98	1	446	38	13	21	26	1.90
374047--374272	114	2.0	114	91	0	362	30	20	15	33	1.93
382526--382835	157	2.0	152	96	3	566	10	21	21	46	1.80
383193--383248	6	8.7	7	92	2	59	62	0	0	37	0.95
383200--383250	3	16.3	3	92	8	84	64	0	0	35	0.94
385629--385654	3	8.7	3	100	0	52	69	30	0	0	0.89
387688--387827	71	2.0	71	98	0	271	27	11	16	45	1.81
391643--391861	29	7.6	29	84	3	280	34	5	15	44	1.70
400672--400770	5	18.8	5	81	6	81	20	9	1	69	1.21
400670--400770	16	6.3	16	80	11	82	20	8	0	69	1.21
405406--405447	22	2.0	21	90	4	66	38	2	0	59	1.10
407088--407504	134	3.1	133	84	3	527	29	16	22	31	1.96
408725--408847	40	3.1	40	73	15	103	8	18	0	73	1.08
408712--408839	16	7.5	16	69	23	57	8	17	0	73	1.08
411155--411204	20	2.5	21	87	6	77	40	18	24	18	1.91
411620--412045	54	7.9	54	79	7	352	31	19	18	30	1.95
411618--411934	108	3.0	108	85	3	417	29	20	18	31	1.96
411620--411947	160	2.0	161	82	5	396	30	20	17	32	1.95
411674--411986	162	1.9	160	82	6	391	31	18	18	31	1.95
411962--412221	55	4.7	55	84	6	312	35	17	19	27	1.94
411962--412222	112	2.3	112	82	5	325	35	17	19	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412926--413051	45	2.8	45	88	0	189	36	11	24	26	1.90
412926--413073	45	3.3	44	87	1	188	37	12	23	26	1.91
416812--416852	20	2.0	20	85	0	55	41	17	26	14	1.88
417268--417638	54	6.9	53	85	4	428	28	17	21	32	1.96
417268--417693	108	4.0	108	78	7	390	30	17	20	31	1.96
417609--417857	55	4.5	54	80	7	259	35	15	21	27	1.94
417649--417854	111	1.9	111	83	0	268	34	14	22	28	1.93
418273--418405	68	2.0	68	83	3	169	32	12	27	27	1.93
418337--418486	81	1.9	81	81	0	183	34	12	24	29	1.91
418569--418691	45	2.7	45	94	0	210	36	13	22	26	1.92
428478--428522	14	3.1	14	76	17	56	31	15	11	42	1.82
428477--428523	15	3.2	15	77	17	62	34	14	10	40	1.81
433538--433590	23	2.3	23	86	0	70	33	24	22	18	1.97
433693--433777	15	5.7	15	80	0	89	42	23	7	27	1.80
434761--434796	19	1.9	19	88	5	56	55	30	2	11	1.49
446299--446330	16	2.0	16	93	0	55	25	21	6	46	1.74
456849--457544	363	1.9	364	88	0	1063	29	21	19	30	1.97
473216--473285	22	3.5	19	77	9	59	30	17	24	28	1.97
473612--473945	58	5.8	58	88	3	489	34	10	20	35	1.87
479577--479972	58	6.8	58	89	0	585	35	11	17	34	1.86
493261--493296	13	2.8	13	86	0	54	36	25	19	19	1.95
495220--495568	176	2.0	175	91	2	567	41	14	9	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501272--501309	18	2.1	18	100	0	76	15	21	47	15	1.82
509758--509795	18	2.1	18	95	0	67	18	21	44	15	1.86
512987--513029	19	2.2	20	91	4	70	44	0	0	55	0.99
518412--518454	2	21.5	2	95	0	77	46	0	0	53	1.00
519308--519380	33	2.2	33	82	4	85	46	28	8	16	1.76
522887--522969	39	2.1	39	88	0	121	44	25	4	25	1.73
536661--537071	207	2.0	206	97	1	781	40	11	6	41	1.67
539123--539229	43	2.5	43	89	3	153	28	21	20	29	1.98
547358--547409	21	2.5	20	87	6	68	40	7	19	32	1.80
547539--547594	21	2.8	21	84	10	64	23	14	26	35	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16