genome.fa.s7744.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007744.1 Hibiscus syriacus cultivar Beakdansim tig00110007_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4276731

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1237236--1237275	20	1.9	22	90	10	66	42	40	5	12	1.64
1237490--1237559	33	2.1	33	83	0	86	32	12	28	25	1.93
1237970--1238581	305	2.0	307	98	1	1185	33	20	17	28	1.95
1240110--1240270	83	1.9	83	81	5	191	42	10	8	39	1.69
1240624--1240681	18	3.1	18	83	11	71	29	13	12	44	1.80
1240877--1240937	23	2.7	23	84	2	79	31	26	16	26	1.96
1241069--1241108	20	1.9	22	90	10	66	37	40	10	12	1.77
1241322--1241392	33	2.2	33	92	0	115	35	12	29	22	1.91
1245285--1245343	17	3.4	17	72	9	64	44	8	11	35	1.72
1245294--1245352	17	3.4	17	69	17	57	37	10	10	42	1.73
1247071--1247178	36	2.9	38	72	14	109	25	16	19	37	1.93
1247071--1247212	72	2.0	72	84	2	187	27	19	17	35	1.94
1250842--1251030	37	5.1	38	78	9	187	20	18	20	41	1.91
1250837--1251030	74	2.6	75	81	4	225	20	18	20	40	1.91
1250825--1251030	111	1.9	111	83	6	274	20	18	21	39	1.92
1258991--1259429	75	5.9	75	88	1	603	30	17	12	38	1.87
1268365--1270874	6	421.2	6	93	4	3848	49	0	20	29	1.50
1270899--1270924	3	8.7	3	100	0	52	69	0	0	30	0.89
1275954--1276011	23	2.5	23	82	2	71	51	13	6	27	1.66
1275960--1276013	23	2.4	22	84	9	72	53	14	7	24	1.66
1276697--1277069	131	2.9	132	83	2	486	29	16	20	33	1.94
1277211--1277248	18	2.2	17	90	9	60	39	10	5	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1281096--1281259	74	2.2	74	90	3	249	30	28	18	22	1.98
1286936--1287032	20	4.7	20	83	8	97	25	28	16	28	1.97
1286936--1287013	23	3.7	21	85	8	95	25	28	15	30	1.96
1287425--1287465	19	2.1	20	86	4	57	17	0	12	70	1.16
1287834--1287890	28	2.0	28	96	0	105	38	7	19	35	1.79
1288947--1288998	20	2.5	21	81	3	52	13	3	25	57	1.53
1289826--1289894	30	2.3	30	89	0	102	31	30	15	21	1.95
1300750--1300813	33	1.9	33	87	0	92	34	10	23	31	1.89
1300786--1300955	44	3.9	44	90	1	270	42	12	20	24	1.86
1300781--1300964	87	2.1	88	92	1	307	40	11	21	25	1.88
1303546--1304024	242	2.0	236	95	3	870	31	16	23	28	1.96
1307724--1307984	42	6.2	44	82	11	303	41	11	21	25	1.87
1308664--1308715	22	2.3	23	81	15	65	67	0	0	32	0.91
1308672--1308742	22	3.4	22	75	12	53	60	1	0	38	1.06
1310112--1310168	21	2.7	21	83	0	69	15	50	14	19	1.77
1310131--1310179	21	2.3	21	82	0	62	16	48	8	26	1.73
1319109--1319153	16	2.8	16	96	0	81	22	13	40	24	1.90
1321873--1321906	15	2.2	16	89	5	52	73	0	2	23	0.97
1325482--1325519	12	3.2	12	85	3	51	78	5	2	13	1.02
1325644--1325697	23	2.2	24	84	15	67	59	11	3	25	1.48
1330519--1330568	23	2.1	24	88	3	75	44	16	12	28	1.83
1330519--1330586	24	2.9	24	82	10	70	48	13	10	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1333270--1333313	22	2.0	22	95	0	79	27	15	4	52	1.63
1340264--1340292	15	1.9	15	100	0	58	51	20	13	13	1.75
1351197--1351223	2	13.5	2	100	0	54	51	0	0	48	1.00
1351703--1351745	21	2.0	21	82	8	52	55	4	6	32	1.47
1352827--1353699	123	7.1	123	89	3	1203	25	18	17	38	1.92
1354491--1354626	54	2.5	54	91	0	209	30	27	8	33	1.87
1354485--1354646	54	3.0	53	83	3	200	28	26	11	33	1.90
1356325--1356460	72	1.9	72	87	0	200	34	20	19	25	1.96
1358026--1358074	20	2.5	20	86	6	64	20	10	20	48	1.78
1358644--1358694	17	3.2	16	78	13	52	72	0	11	15	1.12
1358651--1358694	23	2.0	21	82	8	52	75	0	11	13	1.06
1359955--1360002	24	2.0	24	95	0	87	43	4	4	47	1.41
1360238--1360281	21	2.1	21	83	8	54	56	4	6	31	1.46
1360629--1360841	106	2.0	107	99	0	419	20	31	16	30	1.95
1361570--1361607	3	13.0	3	83	5	51	68	2	0	28	1.03
1361570--1361614	20	2.3	21	85	11	60	71	2	0	26	0.98
1365766--1366147	137	2.8	137	83	3	480	25	15	25	33	1.95
1372245--1372469	53	4.2	53	88	3	344	28	28	13	29	1.94
1372472--1372767	51	5.7	51	89	2	385	21	26	20	31	1.98
1373149--1373338	36	5.2	36	86	1	220	21	19	23	36	1.95
1374057--1374353	123	2.4	124	88	2	422	22	27	17	32	1.96
1375444--1375506	27	2.3	27	81	8	65	7	19	0	73	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1380480--1380594	56	2.0	57	98	1	223	26	39	13	20	1.90
1382592--1382646	28	2.0	28	82	3	67	36	10	20	32	1.87
1386561--1386602	19	2.3	19	87	4	59	47	4	0	47	1.23
1386561--1386615	19	3.0	19	81	5	51	45	5	1	47	1.36
1388844--1388901	23	2.5	24	80	5	64	13	18	32	34	1.91
1392015--1392059	2	23.0	2	95	4	83	51	0	0	48	1.00
1398540--1398571	16	2.0	16	93	0	55	34	25	6	34	1.81
1402531--1402574	15	2.7	16	86	10	54	77	0	0	22	0.77
1411104--1411141	13	3.0	13	88	3	51	57	18	5	18	1.58
1415579--1415616	16	2.2	18	86	13	53	57	7	10	23	1.58
1419231--1419276	20	2.3	20	96	0	83	54	0	30	15	1.41
1423411--1423730	138	2.3	138	83	4	380	47	14	10	26	1.77
1425943--1426024	42	2.0	42	87	4	121	34	19	21	24	1.97
1432394--1432439	20	2.3	19	85	14	58	26	15	8	50	1.73
1450403--1450456	25	2.2	25	100	0	108	44	7	11	37	1.68
1454055--1454093	21	1.9	20	84	5	51	28	15	23	33	1.95
1472973--1473030	6	9.7	6	78	0	53	37	20	1	39	1.63
1473137--1473188	24	2.2	23	79	6	59	44	21	17	17	1.87
1473209--1473278	23	3.0	23	81	4	79	34	18	25	21	1.96
1473405--1473458	16	3.4	16	75	14	58	42	20	5	31	1.75
1474144--1474172	15	1.9	15	100	0	58	20	27	17	34	1.95
1478929--1479013	24	3.6	22	75	13	64	56	2	5	35	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1480049--1480495	47	9.5	47	91	0	725	23	22	9	43	1.83
1480892--1480962	19	3.5	19	80	12	70	30	28	11	29	1.91
1480985--1481031	20	2.3	20	85	7	60	17	29	17	36	1.92
1486755--1486873	38	3.1	38	75	13	127	41	6	25	26	1.80
1487472--1487503	15	2.1	15	100	0	64	46	0	12	40	1.42
1489588--1489670	41	2.0	41	90	4	132	57	3	20	18	1.54
1493165--1493249	24	3.6	24	92	3	129	17	22	22	37	1.94
1493184--1493266	24	3.5	24	91	0	121	22	22	19	34	1.96
1495213--1495424	105	2.0	105	95	3	383	24	14	19	41	1.88
1503903--1503934	2	16.0	2	100	0	64	50	0	0	50	1.00
1505220--1505328	13	8.3	12	76	8	65	77	4	8	10	1.12
1505226--1505300	22	3.4	22	75	10	64	78	4	8	9	1.07
1505342--1505376	17	2.1	17	89	5	54	77	5	2	14	1.07
1505369--1505447	17	4.7	16	73	14	61	73	2	11	12	1.20
1507595--1507714	41	2.9	41	80	6	109	22	16	30	30	1.96
1507617--1507714	42	2.4	40	84	8	117	22	15	32	29	1.95
1519008--1519046	17	2.4	16	86	4	60	66	0	17	15	1.25
1519163--1519247	39	2.1	41	81	12	97	64	2	5	27	1.28
1520292--1520341	18	2.8	18	75	19	52	48	0	4	48	1.20
1520295--1520341	12	3.9	12	81	18	62	46	0	4	48	1.21
1525185--1525297	57	2.0	58	92	1	192	46	17	7	28	1.74
1525185--1525297	29	3.9	29	92	2	192	46	17	7	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1527739--1527942	40	5.6	38	75	13	114	46	4	2	46	1.38
1527818--1527895	31	2.6	31	91	4	124	46	3	2	47	1.34
1527796--1527895	31	3.2	30	83	8	103	48	5	2	45	1.36
1527861--1527949	38	2.3	38	85	11	103	42	4	4	48	1.43
1527861--1527942	40	2.1	40	88	8	125	46	3	3	46	1.38
1528248--1528280	12	2.8	12	95	0	57	0	27	18	54	1.44
1528800--1528939	35	3.9	33	78	12	118	32	11	15	40	1.83
1528840--1528939	33	3.0	33	86	2	137	34	11	17	38	1.84
1529645--1529847	110	1.9	106	87	4	298	24	18	23	33	1.97
1535910--1535986	39	1.9	40	84	7	102	48	5	0	46	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16