genome.fa.s7782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3900615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  1  of  19  ( 2174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991--1041	23	2.2	23	89	6	77	35	13	5	45	1.68
1977--2028	21	2.5	21	81	3	61	38	19	25	17	1.93
2014--2091	41	1.9	41	86	0	111	41	21	15	21	1.90
2017--2111	20	4.7	20	81	2	91	35	24	16	23	1.95
2291--2334	22	2.0	22	95	0	79	20	45	15	18	1.85
3945--3988	18	2.5	18	85	3	63	29	38	13	18	1.89
4449--4494	20	2.3	20	88	0	65	36	26	21	15	1.93
4490--4578	32	2.7	33	87	3	126	48	23	19	8	1.77
4504--4561	14	3.9	14	70	16	53	46	25	20	6	1.75
4523--4578	14	3.3	19	69	25	61	46	25	19	8	1.79
4595--4652	14	3.9	14	70	16	53	6	20	25	46	1.75
4590--4668	32	2.4	33	89	2	124	8	21	24	45	1.80
4641--4707	19	3.5	19	81	4	80	14	22	23	38	1.92
4653--4707	20	2.8	19	86	5	74	16	23	23	36	1.94
6723--6809	19	4.8	19	89	10	139	47	17	21	13	1.82
6694--6809	33	3.4	33	84	11	151	43	19	22	13	1.86
6828--6885	20	2.9	20	94	0	98	17	22	22	37	1.93
7936--7989	24	2.2	24	86	0	72	25	16	18	38	1.92
10444--10651	19	11.7	19	76	15	212	43	18	22	15	1.88
10464--10626	33	4.8	33	86	6	220	44	18	22	15	1.87
10464--10626	66	2.4	69	89	5	251	44	18	22	15	1.87
10647--10689	20	2.2	20	87	4	61	16	18	23	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10444--10651	33	5.8	38	83	8	176	43	18	22	15	1.88
10444--10651	52	3.9	57	75	15	203	43	18	22	15	1.88
10675--10708	14	2.4	14	85	0	50	8	23	20	47	1.78
10830--10866	14	2.6	14	91	0	65	45	24	0	29	1.53
11690--11783	20	4.7	20	80	2	89	23	18	24	34	1.96
11711--11845	41	3.3	41	81	4	130	20	21	20	37	1.94
11772--11864	20	4.6	20	78	4	96	18	24	18	38	1.92
11772--11867	41	2.3	41	98	0	183	18	23	17	39	1.92
12152--12207	22	2.7	21	81	8	60	33	0	1	64	1.04
15230--15262	8	4.2	8	84	7	50	39	24	9	27	1.85
15230--15266	12	3.2	12	88	3	58	37	24	10	27	1.88
15506--15549	21	2.1	21	83	8	54	36	6	2	54	1.40
20946--20985	20	2.0	20	90	0	62	45	7	15	32	1.74
21200--21239	19	2.1	19	95	0	71	42	5	12	40	1.64
28244--28377	65	2.1	64	88	4	198	29	19	21	29	1.98
28766--28826	29	2.0	30	84	9	79	39	8	8	44	1.64
30773--30813	20	2.0	20	100	0	82	29	14	21	34	1.93
30997--31092	44	2.2	43	88	5	140	25	21	25	28	1.99
30994--31067	23	3.3	23	66	21	66	27	22	24	25	2.00
44487--44641	65	2.4	64	85	4	195	30	19	20	29	1.97
48406--48498	45	2.1	45	95	4	170	34	10	5	49	1.60
56586--56616	16	1.9	16	93	0	53	54	6	6	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66407--66454	23	2.1	23	100	0	96	22	12	25	39	1.89
76648--76677	16	1.9	16	93	6	53	23	10	6	60	1.52
81042--81076	18	1.9	18	94	0	61	14	20	17	48	1.81
82840--82864	13	1.9	13	100	0	50	40	4	8	48	1.51
82848--82886	20	2.0	20	89	0	60	33	5	7	53	1.51
83493--83666	87	2.0	87	98	0	339	35	16	24	24	1.95
88648--88684	16	2.2	18	85	9	51	21	5	5	67	1.31
90459--90501	18	2.4	18	88	0	59	23	9	0	67	1.19
96990--97069	24	3.4	24	77	10	85	30	22	25	22	1.99
97040--97113	23	3.2	23	84	0	103	31	24	24	20	1.98
101988--102042	23	2.3	23	84	6	65	47	0	3	49	1.19
102015--102070	29	2.0	28	89	3	85	41	0	3	55	1.17
111285--111338	17	3.2	17	78	19	67	42	11	7	38	1.68
111244--111382	34	4.0	34	81	1	143	38	9	10	41	1.71
112274--112300	2	13.5	2	100	0	54	51	0	0	48	1.00
121414--121445	2	15.5	2	93	6	55	50	3	0	46	1.17
122290--122432	79	1.8	76	81	10	173	41	9	4	44	1.57
125163--125242	17	4.7	17	68	17	58	43	10	6	40	1.63
125155--125252	34	2.9	34	81	0	124	41	11	6	40	1.65
126166--126198	2	16.5	2	100	0	66	51	0	0	48	1.00
140174--140222	18	2.5	19	77	16	55	46	0	0	53	1.00
140460--140516	17	3.2	17	75	15	62	45	0	1	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140455--140567	42	2.9	39	78	16	119	47	0	1	49	1.17
142009--142066	21	2.7	22	86	2	82	24	25	24	25	2.00
144165--144202	20	1.9	20	94	0	67	26	13	26	34	1.93
149212--149238	2	13.5	2	100	0	54	51	0	0	48	1.00
150030--150090	24	2.4	25	81	8	70	49	1	1	47	1.21
150045--150096	24	2.2	24	82	6	61	59	1	0	38	1.08
155413--155570	21	7.8	20	72	7	86	38	25	17	18	1.92
155537--155731	20	9.6	20	80	6	214	35	26	19	18	1.95
155537--155731	61	3.2	60	80	5	230	35	26	19	18	1.95
156055--156124	33	2.2	33	86	2	97	12	22	17	47	1.81
156204--156261	20	2.8	21	82	10	75	44	18	24	12	1.84
156220--156257	20	1.9	20	100	0	76	47	18	26	7	1.76
156243--156298	14	3.7	14	78	17	67	42	23	25	8	1.82
156223--156314	32	2.8	34	86	8	136	44	23	22	8	1.81
156310--156437	19	7.1	19	71	19	87	10	25	18	45	1.82
156332--156388	14	3.7	14	75	20	60	8	24	22	43	1.81
156315--156437	33	3.5	33	88	10	165	10	24	18	46	1.81
156373--156437	21	3.1	21	82	4	96	10	26	15	47	1.78
158121--158582	91	5.1	93	95	3	850	21	12	19	46	1.83
158121--158583	183	2.5	183	94	4	846	21	12	19	46	1.83
158629--158756	19	7.3	19	73	17	116	45	28	17	8	1.78
158665--158756	33	2.8	32	90	6	141	45	28	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158773--158828	14	3.7	14	76	17	58	10	21	23	44	1.83
158757--158846	32	2.8	32	88	6	146	11	21	22	45	1.82
158752--158921	19	9.6	19	76	13	123	11	19	24	45	1.82
158752--158921	38	4.8	38	79	9	141	11	19	24	45	1.82
160710--160744	13	2.6	14	86	9	54	34	0	22	42	1.54
160847--160942	19	5.4	19	81	15	125	44	17	22	14	1.85
160847--160961	53	2.2	50	95	4	203	43	18	24	13	1.86
160951--161071	52	2.3	52	91	4	192	16	22	16	44	1.86
161007--161112	33	3.2	33	88	6	171	13	20	19	46	1.83
163366--163390	12	2.1	12	100	0	50	0	28	0	72	0.86
163561--163607	24	2.0	24	87	8	69	38	21	14	25	1.92
164296--164517	20	11.1	20	85	1	230	19	19	24	36	1.95
164504--164586	21	4.0	21	70	6	69	26	16	22	33	1.96
165066--165123	14	4.2	14	72	16	50	70	1	3	24	1.12
165458--165637	11	15.6	11	68	18	55	46	4	4	45	1.43
165458--165528	24	3.2	22	78	9	63	43	1	7	47	1.39
165593--165637	23	1.9	24	90	4	74	51	13	0	35	1.41
166655--166688	15	2.3	15	100	0	68	47	5	5	41	1.52
166707--166806	32	3.1	33	84	7	109	45	6	6	43	1.53
166771--166888	2	56.0	2	70	21	64	44	5	3	46	1.44
166759--166883	20	6.0	20	70	19	71	45	7	2	44	1.44
166842--167007	27	6.4	27	67	21	72	44	5	4	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166815--166972	56	2.6	58	72	16	142	43	6	5	44	1.51
167003--167031	15	1.9	15	100	0	58	41	6	0	51	1.28
166917--167034	27	4.4	27	81	5	116	42	5	4	47	1.47
167100--167152	18	2.9	18	83	8	63	39	5	5	49	1.50
167149--167187	13	3.0	13	84	0	51	53	5	5	35	1.45
167639--167974	101	3.3	104	86	4	443	32	30	5	31	1.81
168191--168238	24	2.0	23	84	4	60	33	43	10	12	1.77
168439--168489	25	2.0	25	100	0	102	52	15	15	15	1.74
170829--170907	20	4.1	20	76	18	85	16	10	15	58	1.63
171609--171646	13	2.8	13	82	17	51	60	0	2	36	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19