genome.fa.s7782.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3900615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  10  of  19  ( 2174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741549--1741636	28	3.2	27	82	7	106	4	12	0	82	0.80
1741568--1741644	9	8.4	9	84	8	102	3	10	0	85	0.71
1741575--1741666	29	3.1	29	75	10	53	6	10	0	82	0.83
1741569--1741670	36	2.7	36	85	8	116	6	11	0	81	0.87
1741568--1741650	1	83.0	1	75	0	58	4	9	0	85	0.73
1745189--1745215	14	1.9	14	100	0	54	66	3	22	7	1.33
1756303--1756332	11	2.7	11	100	0	60	0	60	13	26	1.34
1756285--1756336	15	3.7	15	80	19	76	0	61	11	26	1.30
1756318--1756390	23	3.2	23	92	0	119	4	56	4	35	1.38
1769155--1769204	25	2.0	25	92	0	82	46	18	8	28	1.77
1773212--1773471	135	1.9	135	82	6	321	31	19	15	33	1.93
1774048--1774140	31	3.0	31	96	0	168	15	27	30	26	1.96
1774239--1774291	25	2.1	25	85	0	70	28	7	15	49	1.71
1776822--1776907	40	2.0	40	84	8	109	30	15	22	32	1.94
1777008--1777069	21	3.0	21	80	0	70	54	19	4	20	1.62
1780190--1780711	81	6.3	83	79	6	386	32	15	20	31	1.94
1780202--1780711	42	12.4	42	78	6	386	31	16	20	31	1.95
1780156--1780711	163	3.4	161	77	8	523	32	15	20	30	1.94
1787227--1787353	44	3.0	44	87	6	147	42	7	19	30	1.78
1787244--1787353	45	2.5	44	92	1	175	40	7	20	31	1.79
1787244--1787368	44	2.8	45	89	4	182	42	6	20	30	1.77
1789294--1789336	18	2.4	18	88	7	61	20	9	4	65	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1789294--1789347	18	2.9	18	83	8	56	22	9	3	64	1.38
1795388--1795412	13	1.9	13	100	0	50	16	4	0	80	0.87
1800000--1800042	18	2.4	18	88	7	61	20	9	4	65	1.40
1800000--1800053	18	2.9	18	83	8	56	22	9	3	64	1.38
1805519--1805571	15	3.5	15	86	0	79	7	11	66	15	1.44
1805519--1805575	30	1.9	29	92	3	96	10	10	63	15	1.52
1815418--1815467	19	2.5	20	83	3	66	22	20	26	32	1.98
1817668--1817709	22	1.9	22	85	0	57	23	2	38	35	1.68
1818866--1818909	18	2.4	18	82	17	56	43	2	13	40	1.57
1818866--1818908	17	2.4	18	81	18	54	44	2	13	39	1.57
1826407--1826458	23	2.2	23	89	3	77	23	36	9	30	1.87
1830742--1830805	17	3.7	17	80	10	76	40	12	15	31	1.85
1830827--1830883	17	3.4	17	76	9	62	42	14	10	33	1.79
1834414--1834438	3	8.3	3	100	0	50	0	32	0	68	0.90
1845514--1845579	17	3.8	17	72	4	60	39	10	12	37	1.77
1847141--1847201	28	2.2	28	82	5	70	22	3	0	73	0.97
1847132--1847200	17	4.0	16	69	20	50	24	2	0	72	0.98
1847337--1847423	27	3.4	27	69	24	71	34	3	1	60	1.21
1847444--1847482	17	2.3	17	82	8	53	35	5	0	58	1.20
1847443--1847483	18	2.4	17	79	4	55	34	4	0	60	1.18
1853882--1853920	2	19.5	2	100	0	78	51	0	0	48	1.00
1855892--1855925	13	2.6	13	100	0	68	14	44	23	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1859198--1859467	55	4.9	55	87	5	343	27	25	14	31	1.95
1859397--1860109	54	13.3	54	86	5	892	21	25	19	33	1.97
1860481--1860601	36	3.3	36	74	3	100	25	17	21	35	1.95
1866308--1866430	47	2.6	47	88	1	176	30	21	16	31	1.95
1871440--1871817	43	8.8	43	91	1	580	17	27	24	30	1.97
1873897--1873933	18	2.1	18	95	5	67	40	0	10	48	1.38
1875530--1875622	21	4.5	21	78	4	100	39	18	24	17	1.91
1875530--1875622	41	2.3	41	100	0	186	39	18	24	17	1.91
1875549--1875683	41	3.3	41	83	4	139	37	21	21	19	1.94
1875653--1875705	20	2.7	20	93	0	88	24	28	20	26	1.99
1876218--1876298	19	4.5	19	73	16	73	46	24	17	11	1.80
1876294--1876478	19	10.1	19	75	14	165	12	22	21	44	1.85
1876294--1876383	39	2.3	38	92	1	144	12	20	20	47	1.81
1876366--1876453	33	2.6	33	92	1	140	11	25	25	38	1.89
1876421--1876478	20	2.9	20	80	10	64	13	24	18	43	1.87
1878260--1878351	41	2.2	41	82	1	112	21	38	16	23	1.93
1878820--1878909	45	2.0	45	100	0	180	51	11	15	22	1.75
1879771--1879806	14	2.6	14	95	0	63	30	0	25	44	1.54
1879913--1879966	20	2.7	20	80	8	65	51	18	18	11	1.74
1879977--1880103	33	3.9	32	85	8	184	15	22	19	42	1.89
1879975--1880099	66	1.9	66	98	0	241	16	21	20	42	1.89
1880089--1880130	20	2.2	20	86	4	59	26	16	21	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1882574--1882627	24	2.2	24	90	0	81	38	20	16	24	1.92
1883682--1883739	20	2.9	20	92	0	89	37	20	22	18	1.94
1883763--1883816	14	3.5	14	77	22	63	11	20	20	48	1.80
1883745--1883815	33	2.2	33	84	0	88	19	19	21	39	1.93
1883758--1883827	33	2.1	33	91	0	113	12	24	20	42	1.86
1885822--1885888	19	3.5	19	79	4	80	37	22	23	16	1.94
1885877--1885934	14	3.9	14	79	16	71	48	24	17	10	1.78
1885869--1885939	32	2.2	33	92	2	126	47	22	19	9	1.78
1885968--1886025	14	3.9	14	75	16	53	12	15	20	51	1.75
1885951--1886038	32	2.7	33	89	3	133	12	18	19	50	1.78
1886026--1886069	20	2.2	20	88	4	63	18	25	20	36	1.95
1886035--1886080	20	2.3	20	84	0	56	17	21	23	36	1.94
1886561--1886605	18	2.5	18	88	0	72	13	15	44	26	1.83
1887925--1887962	20	1.9	20	88	0	58	50	21	15	13	1.78
1888457--1888550	20	4.7	20	80	2	89	23	18	24	34	1.96
1888477--1888554	41	1.9	41	86	0	111	21	16	21	39	1.92
1888437--1888551	20	5.7	20	78	5	88	23	17	23	35	1.95
1888477--1888572	41	2.3	41	80	3	104	20	19	21	37	1.94
1888683--1888719	19	1.9	19	88	0	56	16	18	29	35	1.93
1899481--1899552	35	2.1	35	83	0	90	30	8	9	51	1.64
1900313--1900398	7	12.3	7	97	0	163	43	1	43	12	1.50
1901254--1901305	21	2.5	21	96	0	95	42	7	0	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1901524--1901560	19	1.9	19	89	10	58	32	0	0	67	0.91
1904266--1904303	2	19.5	2	94	5	69	50	0	0	50	1.00
1906187--1906236	21	2.4	21	79	0	64	50	14	4	32	1.61
1909221--1909259	20	2.0	19	85	5	51	66	5	0	28	1.12
1909409--1909480	36	2.0	36	97	0	135	37	13	9	38	1.78
1916855--1916941	31	2.8	30	77	10	86	52	3	1	42	1.25
1923584--1923629	24	1.9	24	90	0	74	4	41	8	45	1.55
1931510--1931548	17	2.3	17	86	0	51	30	7	23	38	1.83
1932661--1932713	24	2.2	24	93	0	88	9	11	22	56	1.63
1932661--1932732	24	3.0	23	84	8	74	12	11	19	56	1.65
1932662--1932732	34	2.1	34	83	0	88	12	9	19	57	1.63
1933646--1933718	16	4.7	16	83	3	78	12	10	17	58	1.61
1933646--1933710	32	2.0	32	87	0	94	10	12	20	56	1.65
1937183--1937242	24	2.5	24	75	5	59	30	0	21	48	1.51
1939643--1939683	20	2.0	20	85	0	55	26	19	17	36	1.94
1951742--1951946	103	2.0	103	86	3	290	25	18	27	28	1.98
1957131--1957166	14	2.6	14	95	4	65	55	0	30	13	1.39
1960884--1960969	44	1.9	45	90	2	138	41	5	22	30	1.77
1973570--1974282	112	6.3	113	90	2	1089	32	12	12	43	1.79
1973570--1974282	225	3.2	225	90	2	1112	32	12	12	43	1.79
1974509--1974770	87	3.0	87	90	2	418	32	12	11	43	1.78
1974611--1974655	23	2.0	23	86	0	63	40	17	8	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1974698--1974742	23	2.0	23	86	0	63	40	17	8	33	1.81
1987695--1987740	21	2.2	20	80	3	56	36	0	0	63	0.95
1988325--1988634	153	2.0	156	98	1	599	30	12	12	44	1.80
1990169--1990199	2	15.5	2	100	0	62	51	0	0	48	1.00
1991295--1991409	42	2.7	42	95	0	203	47	15	3	33	1.62
1992631--1992673	20	2.3	20	88	11	65	53	11	16	18	1.72
1992626--1992673	20	2.6	18	81	18	62	56	10	14	18	1.66
1994877--1994941	21	3.1	21	80	6	69	40	15	29	15	1.88
1994975--1995040	33	2.0	33	90	0	105	28	0	48	22	1.51
1997409--1997476	21	3.4	18	69	21	55	36	8	35	19	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19