genome.fa.s7782.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3900615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  4  of  19  ( 2174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607058--607097	20	1.9	21	85	10	55	37	37	10	15	1.80
607749--607787	19	2.0	20	90	5	62	41	0	0	58	0.98
607764--607841	33	2.6	31	86	11	101	43	0	1	55	1.08
607764--607852	33	2.9	31	84	12	89	44	0	1	53	1.07
607784--607853	31	2.2	30	80	14	79	47	0	1	51	1.09
607797--607860	33	1.9	33	81	12	78	50	0	1	48	1.10
607884--607934	23	2.2	23	82	0	57	45	1	1	50	1.24
607922--608002	19	4.3	19	72	20	64	48	1	1	49	1.17
608068--608133	17	3.7	18	75	16	66	48	0	0	51	1.00
608068--608114	19	2.5	19	89	0	76	44	0	0	55	0.99
608351--608379	14	2.0	15	93	6	51	48	6	0	44	1.29
608831--608932	23	4.3	24	80	4	82	21	12	19	46	1.83
608858--608918	12	5.0	12	70	4	50	22	9	18	49	1.77
608830--608923	25	3.9	24	80	4	109	23	11	17	47	1.80
611670--611756	35	2.5	34	80	12	97	55	10	6	27	1.59
611983--612011	3	9.7	3	100	0	58	0	34	31	34	1.58
614010--614085	29	2.5	30	79	12	75	65	3	0	30	1.10
624340--624420	30	2.7	30	84	0	90	50	13	13	22	1.76
625440--625494	23	2.4	23	87	0	74	56	14	18	10	1.67
627805--627994	82	2.3	82	85	2	247	31	18	17	32	1.94
627947--628150	41	4.9	41	84	3	248	27	16	19	37	1.92
627934--628150	84	2.6	81	85	6	274	26	16	18	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630738--630780	17	2.4	18	80	11	52	30	16	6	46	1.73
632466--632551	41	2.1	41	86	0	118	27	16	15	40	1.88
635773--635993	86	2.6	85	86	2	293	24	21	19	33	1.97
635773--635970	43	4.6	43	83	2	256	25	20	19	33	1.97
656678--656723	20	2.3	19	89	10	74	54	10	17	17	1.70
656845--656891	20	2.4	19	82	10	67	53	10	17	19	1.72
656854--656896	20	2.3	19	88	11	63	51	11	16	20	1.75
659110--659174	21	3.1	21	80	6	69	40	15	29	15	1.88
659208--659273	33	2.0	33	87	0	96	27	0	48	24	1.51
661067--661115	19	2.6	19	93	0	80	30	2	10	57	1.43
661234--662587	198	6.9	199	94	3	2413	36	15	16	31	1.91
664809--664873	25	2.6	25	80	0	85	35	9	13	41	1.77
665156--665219	23	2.8	23	87	0	92	35	6	20	37	1.78
665156--665228	23	3.2	23	82	7	85	34	5	20	39	1.76
665231--665267	19	1.9	19	88	0	56	27	16	10	45	1.80
665413--665463	25	2.0	25	92	0	84	33	7	19	39	1.81
665851--665887	18	2.1	18	89	0	56	32	5	10	51	1.60
665843--665889	24	2.0	24	86	0	67	34	4	14	46	1.64
666145--666231	39	2.2	39	93	0	147	49	19	13	17	1.79
666644--666683	20	2.0	20	90	0	62	35	7	17	40	1.78
666636--666710	23	3.5	22	77	14	75	34	4	21	40	1.72
666748--667416	335	2.0	333	97	1	1250	42	7	11	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668554--668606	14	3.8	14	75	9	54	56	0	0	43	0.99
668992--669032	20	2.1	20	90	4	66	56	0	0	43	0.99
669015--669100	23	3.4	25	84	11	104	52	0	3	44	1.18
676340--676471	41	3.2	41	85	4	167	26	22	18	32	1.97
681641--681706	35	1.9	34	84	6	89	28	40	4	25	1.75
682091--682144	6	9.0	6	76	15	58	79	3	16	0	0.87
698993--699032	20	2.0	20	100	0	80	20	25	25	30	1.99
704479--704508	15	2.0	15	100	0	60	33	13	40	13	1.83
707321--707404	42	2.0	42	95	0	150	29	15	16	38	1.90
712476--712535	21	3.0	19	73	20	59	51	5	5	38	1.45
713704--713736	15	2.1	16	88	5	50	72	0	3	24	0.98
716586--716626	21	2.0	21	95	0	73	26	24	19	29	1.98
723386--723427	2	21.0	2	100	0	84	50	0	0	50	1.00
725547--725581	18	1.9	18	94	0	61	25	31	22	20	1.98
726526--726765	118	2.0	118	99	0	473	34	20	8	36	1.83
728343--728532	95	2.0	95	100	0	380	30	22	14	32	1.94
732455--732492	18	2.1	18	95	0	67	21	31	18	28	1.97
733537--733834	148	2.0	148	100	0	596	30	26	5	37	1.79
745524--745567	12	3.4	12	77	17	52	65	0	0	34	0.93
752543--752588	22	2.1	22	100	0	92	30	19	26	23	1.98
753151--753252	31	3.3	31	94	0	177	41	20	17	20	1.91
753508--753547	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758331--758393	31	2.0	31	96	0	117	38	22	19	20	1.94
759850--759907	20	2.7	20	86	10	71	27	22	18	31	1.97
762873--762918	22	2.1	22	100	0	92	30	19	26	23	1.98
763457--763519	31	2.0	31	96	0	117	38	22	19	20	1.94
763773--763816	2	22.0	2	95	0	79	52	0	0	47	1.00
763879--763908	2	14.5	2	93	6	51	46	3	0	50	1.18
765063--765202	63	2.2	62	81	7	149	24	25	19	31	1.98
768954--769004	21	2.4	21	83	0	75	29	25	25	19	1.99
768981--769085	42	2.5	42	76	6	113	23	20	31	23	1.98
770802--770847	15	2.9	16	80	6	58	52	0	0	47	1.00
775786--775844	31	1.9	31	89	0	91	38	6	11	42	1.68
775869--775911	22	2.0	22	100	0	86	51	13	0	34	1.42
775859--776426	54	10.4	54	78	9	464	53	12	0	33	1.39
775871--775919	22	2.2	22	88	3	71	55	14	0	30	1.40
775874--776193	80	3.9	80	86	9	489	53	13	0	32	1.40
775997--776050	14	3.6	14	72	18	54	57	5	0	37	1.22
775971--776055	32	2.5	36	79	15	115	55	10	0	34	1.34
776039--776081	22	2.0	22	95	0	77	51	11	0	37	1.39
776041--776089	22	2.2	22	85	3	62	55	12	0	32	1.37
776007--776381	134	2.8	134	97	0	698	52	13	0	33	1.40
776095--776169	22	3.2	23	75	17	82	54	17	0	28	1.43
776173--776215	22	2.0	22	100	0	86	51	13	0	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775874--776426	188	2.9	185	80	11	575	53	13	0	33	1.40
776175--776223	22	2.2	22	88	3	71	55	14	0	30	1.40
776178--776327	80	1.9	80	98	0	291	53	14	0	32	1.42
776229--776303	22	3.2	23	75	17	82	54	17	0	28	1.43
776361--776463	22	4.5	22	70	7	80	50	9	0	39	1.35
776406--776591	15	12.5	15	77	15	190	50	2	0	46	1.19
776352--776564	60	3.3	67	84	9	228	50	5	0	44	1.28
776352--776478	37	3.6	37	76	11	140	51	7	0	40	1.31
776449--776633	30	6.4	30	79	12	217	48	2	0	48	1.17
776540--776587	23	2.1	23	96	0	87	50	0	0	50	1.00
776510--776612	53	2.0	51	88	3	152	49	1	0	48	1.12
776496--776634	68	2.0	68	82	6	165	48	2	0	48	1.16
777166--777222	30	2.0	30	82	6	73	47	3	3	45	1.37
777073--777465	190	2.1	190	85	4	517	40	6	8	44	1.61
777438--777507	34	2.1	34	84	10	90	37	4	7	51	1.49
780861--781269	190	2.1	190	82	7	540	38	7	10	44	1.65
784164--784284	61	2.0	62	80	11	142	23	19	26	31	1.98
785049--785120	30	2.4	30	100	0	144	16	36	6	40	1.76
789269--789314	13	3.5	13	87	0	74	30	19	21	28	1.98
789127--789288	84	1.9	84	81	10	197	30	19	18	30	1.96
789263--789314	26	2.0	26	88	0	77	34	17	21	26	1.95
793249--793324	37	2.1	37	100	0	152	47	7	10	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798127--798162	2	18.0	2	100	0	72	50	0	0	50	1.00
799959--800004	22	2.1	22	83	0	56	67	0	2	30	1.03
800720--800816	42	2.3	42	83	1	124	32	21	18	26	1.97
800688--801609	233	4.0	233	90	0	1344	34	17	16	31	1.92
800979--801048	20	3.5	20	67	16	54	32	21	24	21	1.98
801158--801281	42	3.0	40	76	4	113	29	21	22	26	1.99
801391--801514	42	3.0	42	81	6	146	29	24	20	25	1.99
800687--801592	465	1.9	466	89	0	1393	34	17	16	31	1.93
803806--803871	2	33.0	2	100	0	132	50	0	0	50	1.00
815859--815921	23	2.7	23	97	0	117	20	31	26	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19