genome.fa.s7782.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3900615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  2  of  19  ( 2174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171625--171671	19	2.5	19	86	3	60	59	0	8	31	1.27
173514--173577	32	2.0	32	96	0	119	57	9	0	32	1.30
178652--178717	23	2.9	23	90	0	105	39	15	18	27	1.90
178794--178832	16	2.5	16	87	4	53	30	23	10	35	1.88
181534--181793	82	3.1	81	76	9	256	33	15	18	32	1.92
181547--181766	85	2.7	81	79	6	226	34	14	18	33	1.91
182050--182095	24	1.9	24	86	8	67	41	17	21	19	1.90
185807--185904	45	2.1	48	88	5	148	29	12	19	38	1.88
195491--195635	17	8.2	17	68	22	95	71	0	17	11	1.15
195485--195650	25	6.4	25	71	19	99	70	0	18	11	1.16
196677--196711	17	2.1	17	89	10	54	42	2	25	28	1.69
197025--197417	55	7.1	55	86	4	456	29	16	23	31	1.96
197021--197455	165	2.6	165	82	7	533	29	16	23	30	1.96
197021--197466	110	4.1	110	83	6	469	29	16	23	30	1.96
197040--197466	55	7.8	56	82	5	344	29	15	23	30	1.96
200562--200591	12	2.5	12	94	0	51	40	16	13	30	1.87
201205--201275	24	3.0	24	89	2	108	30	25	23	19	1.98
202784--202823	8	5.2	8	91	8	66	62	0	37	0	0.95
203337--203377	19	2.2	19	91	4	66	9	24	7	58	1.55
232895--232944	13	3.8	13	73	19	50	18	2	4	76	1.04
232891--233005	22	5.3	22	69	11	85	19	5	1	73	1.10
235486--235579	31	3.0	31	100	0	188	32	25	12	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235632--235824	95	2.0	95	92	3	318	34	18	17	30	1.93
236929--237203	86	3.2	86	82	3	351	36	22	19	21	1.95
237146--237259	54	2.1	55	85	4	151	37	23	16	21	1.93
237064--237343	140	2.0	140	95	0	497	37	23	17	22	1.94
237199--237621	85	4.9	87	81	3	466	35	22	17	23	1.95
237204--237621	172	2.4	170	87	1	577	35	22	17	24	1.95
239349--239396	4	11.5	4	82	8	51	20	2	2	75	1.02
239349--239413	12	5.2	12	75	14	51	20	1	1	76	0.94
239364--239420	15	3.7	15	78	15	53	15	3	1	78	0.96
239444--239487	21	2.2	20	83	4	52	18	6	0	75	1.02
244287--244320	16	2.1	16	88	0	50	55	20	11	11	1.67
244219--244489	133	2.0	135	87	2	393	37	15	15	30	1.90
244518--244557	10	4.0	10	90	0	62	57	22	12	7	1.60
244519--244558	20	2.0	20	95	0	71	55	22	15	7	1.65
244528--244612	23	3.7	23	72	9	82	60	17	11	10	1.59
247504--247596	15	6.2	15	84	0	114	31	16	21	31	1.95
247494--247582	30	3.0	30	86	0	115	32	16	20	30	1.95
256817--257322	279	1.8	280	87	1	764	26	16	20	36	1.94
261169--261259	3	31.0	3	75	16	84	34	1	0	64	1.01
261188--261229	5	8.2	5	89	10	59	35	0	0	64	0.94
262670--262699	15	2.0	15	93	0	51	43	3	0	53	1.17
262669--262963	147	2.0	147	82	7	359	37	6	8	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263457--263514	28	2.2	26	87	6	80	32	5	0	62	1.18
278737--278774	18	2.1	18	95	0	67	31	10	2	55	1.48
279400--279484	22	3.9	22	93	0	143	35	15	14	35	1.87
279839--280406	113	4.9	113	87	4	680	38	14	19	27	1.90
280214--280277	20	3.2	20	63	20	53	43	9	21	25	1.82
280202--280496	123	2.4	122	91	1	475	42	13	19	24	1.88
280334--280393	19	3.0	21	65	30	58	51	8	21	18	1.72
280779--280913	3	46.0	3	76	15	131	29	2	1	66	1.12
280777--280903	28	4.4	29	85	9	156	28	2	1	67	1.12
282104--282400	146	2.0	146	82	6	361	38	7	8	46	1.62
290887--290921	2	17.5	2	100	0	70	48	0	0	51	1.00
291135--291166	2	16.0	2	100	0	64	50	0	0	50	1.00
291606--291674	31	2.2	32	92	2	113	34	0	5	59	1.21
297398--297428	15	2.1	15	100	0	62	32	19	6	41	1.77
304622--304701	40	2.0	40	100	0	160	27	7	20	45	1.78
307028--307069	20	2.1	20	90	0	66	33	9	21	35	1.86
309071--309428	178	2.0	179	98	1	700	26	16	15	42	1.87
311063--311109	24	1.9	25	86	4	69	42	14	0	42	1.46
316424--316588	85	1.9	85	91	2	269	32	17	20	30	1.95
316567--316653	13	6.7	13	89	0	129	34	17	20	27	1.95
319124--319251	31	4.1	31	75	13	127	35	19	16	28	1.93
319125--319248	62	2.0	62	86	10	173	34	19	16	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319556--319602	24	1.9	25	86	4	69	42	14	0	42	1.46
321032--321118	31	2.8	32	80	3	95	28	13	19	37	1.90
324893--324919	5	5.4	5	100	0	54	0	62	0	37	0.95
339467--339500	17	2.1	16	88	5	50	14	8	0	76	1.01
343482--343506	2	12.5	2	100	0	50	48	0	0	52	1.00
344312--344362	22	2.3	22	100	0	102	27	21	23	27	1.99
345397--345449	26	2.0	26	100	0	106	43	11	22	22	1.85
346101--346602	167	3.0	166	92	2	828	39	8	11	40	1.72
350616--350650	16	2.2	16	94	0	61	22	22	5	48	1.72
351895--352067	64	2.8	63	82	10	203	27	12	20	39	1.88
351948--352076	64	2.0	65	92	1	215	27	13	20	38	1.90
353422--353823	201	2.0	201	100	0	804	32	16	15	35	1.90
353748--353924	99	1.8	98	92	2	302	33	16	14	35	1.89
357562--357620	30	2.0	29	83	3	73	37	6	22	33	1.80
357841--357894	23	2.4	23	75	3	56	24	25	16	33	1.96
362405--362467	23	2.7	23	80	0	72	17	25	26	30	1.97
362583--362647	28	2.4	26	80	12	69	27	1	20	50	1.57
368753--368791	13	2.9	14	82	17	55	38	10	0	51	1.36
368753--368796	13	3.3	13	79	17	54	40	9	0	50	1.34
369203--369274	29	2.4	30	81	6	85	37	33	4	25	1.75
372657--372990	137	2.4	137	88	1	483	25	19	22	32	1.98
372913--373070	85	1.9	85	85	2	219	26	15	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372656--373348	361	1.9	359	84	3	917	25	19	23	32	1.97
372997--373624	139	4.6	137	85	3	762	24	18	23	33	1.97
372997--373624	277	2.3	277	86	3	847	24	18	23	33	1.97
374484--374550	21	3.2	21	80	0	80	19	25	32	22	1.97
374915--374944	11	2.7	11	94	0	51	33	30	3	33	1.74
375195--375230	17	2.1	17	90	10	56	52	5	0	41	1.24
376395--376488	30	3.2	29	82	8	93	58	1	0	40	1.05
376414--376499	30	2.7	32	82	8	104	58	2	0	39	1.11
376740--376887	61	2.4	61	87	4	201	22	33	25	18	1.97
377712--377741	2	15.5	2	93	6	53	50	0	0	50	1.00
377838--377879	20	2.2	19	86	4	57	28	2	2	66	1.16
378069--378179	2	56.0	2	98	1	215	49	0	0	50	1.00
379380--379404	13	1.9	13	100	0	50	40	12	0	48	1.40
380455--380487	16	2.0	17	94	5	59	30	9	36	24	1.86
382285--382311	13	2.1	13	100	0	54	33	22	29	14	1.94
383139--383188	22	2.3	22	96	0	91	50	8	20	22	1.74
388828--388928	21	4.8	21	93	1	166	39	16	18	24	1.91
390101--390153	24	2.2	24	83	6	63	41	3	33	20	1.70
394434--394521	2	44.0	2	95	0	158	47	0	2	50	1.13
397814--398048	39	6.0	39	85	4	314	37	28	7	26	1.84
397813--398045	117	2.0	117	88	3	353	37	29	7	26	1.83
403836--403885	22	2.3	22	86	10	68	72	4	0	24	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403836--403906	21	3.3	21	77	16	74	69	2	0	28	1.03
403850--403913	22	3.0	21	80	13	67	65	3	1	29	1.17
403834--403891	30	1.9	30	85	3	80	72	3	0	24	1.00
403833--403900	23	3.0	22	80	10	66	67	2	0	29	1.05
404375--404419	16	2.8	17	83	6	58	71	0	4	24	1.05
404452--404510	29	2.0	29	81	18	70	67	1	1	28	1.10
404480--404513	10	3.8	9	88	11	52	64	0	2	32	1.08
404467--404519	18	2.9	18	81	8	63	62	0	1	35	1.06
405161--405204	22	1.9	24	86	9	65	27	0	4	68	1.09
405492--405542	13	3.9	13	78	0	57	31	9	17	41	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19