genome.fa.s7782.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007782.1 Hibiscus syriacus cultivar Beakdansim tig00110065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3900615

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  14  of  19  ( 2174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2806250--2806291	4	10.5	4	94	0	57	69	0	7	23	1.13
2807854--2807883	15	2.0	15	100	0	60	6	13	20	60	1.55
2829871--2829905	16	2.2	16	100	0	70	60	22	5	11	1.52
2837071--2837144	35	2.2	33	90	4	112	39	24	1	35	1.64
2837518--2837767	123	2.0	120	86	6	340	36	14	12	37	1.83
2838091--2838151	26	2.3	26	82	5	68	45	1	3	49	1.28
2838226--2838262	15	2.4	16	86	13	51	59	5	2	32	1.34
2841102--2841611	255	2.0	255	100	0	1020	42	21	13	22	1.88
2849015--2849057	23	1.9	21	81	13	50	34	13	18	32	1.90
2860253--2860295	21	2.0	21	81	0	50	39	2	4	53	1.34
2862124--2862198	38	2.0	36	84	5	96	37	8	30	24	1.84
2864513--2864590	35	2.2	35	90	6	122	16	14	7	61	1.55
2865102--2865304	99	2.1	99	89	1	309	34	14	16	34	1.89
2867916--2867972	26	2.2	26	84	6	71	40	1	3	54	1.28
2867960--2868015	21	2.7	20	79	20	69	41	3	0	55	1.17
2870142--2870310	37	4.5	37	81	7	180	45	7	2	43	1.47
2870166--2870322	75	2.1	75	82	7	185	47	7	1	43	1.41
2871774--2871925	28	5.3	28	70	18	84	38	3	1	56	1.27
2871746--2871906	58	2.7	61	76	10	156	37	4	1	55	1.30
2871744--2871924	58	3.1	57	75	11	154	38	4	2	54	1.33
2871773--2871941	87	2.0	86	80	10	193	39	4	1	55	1.30
2871932--2871997	30	2.2	30	89	5	98	36	9	1	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2872788--2873313	264	2.0	264	93	0	908	34	19	11	33	1.88
2873576--2873626	22	2.3	22	86	3	66	39	17	17	25	1.92
2878360--2878426	22	3.0	21	78	8	71	38	20	16	23	1.92
2882966--2883011	22	2.1	22	100	0	92	34	17	21	26	1.95
2890440--2890816	55	6.9	55	89	0	547	35	10	17	36	1.84
2890440--2890907	110	4.3	110	84	3	383	35	11	18	35	1.86
2890975--2891086	49	2.3	49	87	1	154	28	16	25	30	1.96
2894027--2894062	18	2.0	18	88	0	54	25	30	22	22	1.99
2895512--2895545	14	2.3	15	90	5	52	64	0	32	2	1.08
2900366--2900409	18	2.4	18	88	0	70	20	34	13	31	1.92
2903163--2903215	26	2.0	26	96	0	97	32	13	24	30	1.93
2909579--2910017	78	5.7	77	76	10	297	38	17	20	22	1.93
2909981--2910047	33	2.0	33	91	0	107	29	17	22	29	1.97
2911588--2911626	2	19.5	2	100	0	78	48	0	0	51	1.00
2912737--2912898	32	5.1	32	75	0	117	33	19	10	36	1.86
2913850--2913889	21	2.0	20	85	5	53	32	20	5	42	1.73
2933939--2933987	23	2.1	23	85	7	64	26	2	14	57	1.48
2936243--2936286	21	2.1	21	82	0	52	31	18	18	31	1.95
2940808--2940852	20	2.2	20	84	7	56	13	22	0	64	1.28
2944717--2945218	248	2.0	252	97	2	949	29	20	11	38	1.87
2946000--2946090	20	4.6	20	87	2	121	35	17	9	37	1.83
2947523--2947550	3	9.3	3	100	0	56	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950503--2950548	20	2.3	20	88	0	65	32	30	10	26	1.90
2959959--2960114	75	2.1	74	96	3	296	51	10	10	28	1.68
2964878--2965317	220	2.0	220	97	1	839	35	14	24	25	1.94
2966837--2966911	37	2.0	37	100	0	150	28	29	10	32	1.90
2973226--2973338	23	4.9	23	92	0	145	29	23	23	23	1.99
2973210--2973338	69	1.9	67	82	9	163	29	24	22	23	1.99
2973446--2973497	15	3.6	14	75	10	50	34	21	9	34	1.86
2976354--2976413	23	2.7	22	82	5	68	40	21	18	20	1.92
2976675--2976708	14	2.3	15	90	5	52	38	23	0	38	1.55
2980390--2980416	2	13.5	2	100	0	54	48	0	0	51	1.00
2980594--2980651	21	2.8	21	86	0	80	39	29	13	17	1.88
2980665--2980747	42	2.0	42	85	0	112	39	24	13	22	1.90
2986492--2986572	23	3.6	22	75	6	74	34	24	19	20	1.96
2986681--2986713	15	2.3	15	89	5	50	27	24	12	36	1.91
3000031--3000086	23	2.4	23	87	0	85	28	25	19	26	1.99
3005445--3005492	24	2.0	24	96	4	89	33	14	12	39	1.84
3013487--3013527	22	1.9	21	90	5	64	41	36	2	19	1.65
3013825--3013859	18	1.9	18	88	11	54	80	5	11	2	1.00
3019064--3019104	22	1.9	21	90	5	64	41	36	2	19	1.65
3020657--3020706	20	2.5	20	86	0	64	30	22	8	40	1.82
3024136--3024184	20	2.5	20	96	0	89	36	22	4	36	1.73
3025179--3025217	18	2.2	18	100	0	78	46	17	0	35	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3025593--3025653	23	2.7	23	78	0	77	27	24	26	21	1.99
3026293--3026416	65	1.9	65	84	12	166	23	17	23	35	1.95
3028855--3028932	23	3.4	23	68	10	79	41	19	7	32	1.80
3028846--3028943	45	2.2	45	100	0	196	37	17	13	31	1.88
3036835--3036862	7	4.0	7	100	0	56	28	0	28	42	1.56
3037497--3037553	23	2.5	23	81	16	73	29	12	15	42	1.84
3041177--3041209	14	2.4	14	94	0	57	30	30	6	33	1.82
3044220--3044269	16	2.8	18	85	14	77	26	26	22	26	2.00
3044321--3044424	21	5.0	21	95	0	172	29	21	27	21	1.98
3044584--3044630	20	2.3	20	85	0	67	40	25	25	8	1.84
3044604--3044669	30	2.2	30	88	0	96	34	22	28	13	1.92
3048357--3048394	18	2.1	18	95	0	67	34	13	5	47	1.65
3049147--3049184	2	19.5	2	89	5	60	44	0	2	52	1.14
3049139--3049205	8	9.7	7	77	16	52	37	0	1	61	1.05
3049457--3049546	21	4.2	21	78	14	71	30	4	1	64	1.20
3049481--3049543	28	2.3	27	78	13	67	28	3	1	66	1.16
3049632--3049687	19	2.9	19	75	19	62	23	8	1	66	1.30
3050791--3050827	19	1.9	19	89	10	58	8	24	0	67	1.17
3054237--3054285	8	6.1	8	80	0	62	81	4	14	0	0.83
3054238--3054294	15	3.9	14	77	20	55	80	5	14	0	0.87
3054244--3054294	15	3.3	15	82	17	61	80	5	13	0	0.89
3054910--3054965	22	2.5	22	94	5	96	37	23	12	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3055896--3057084	106	11.3	106	89	3	1697	34	24	17	22	1.96
3058346--3058393	16	2.9	16	81	9	53	72	0	2	25	0.95
3058355--3058442	22	4.2	21	72	16	58	64	0	3	31	1.10
3058332--3058421	18	4.8	18	75	15	76	67	0	3	28	1.06
3058438--3058462	8	3.1	8	100	0	50	60	0	0	40	0.97
3060735--3060913	32	5.6	32	80	5	146	39	12	17	30	1.88
3060735--3060913	64	2.8	64	77	3	198	39	12	17	30	1.88
3060730--3060930	64	3.1	64	76	2	188	37	14	19	28	1.91
3060730--3060945	96	2.2	96	78	1	227	37	14	18	29	1.91
3062639--3062694	15	3.7	15	77	13	51	48	0	1	50	1.11
3064950--3065029	42	1.9	42	92	0	133	15	15	30	40	1.87
3067012--3067310	149	2.0	149	100	0	598	38	23	10	27	1.87
3072343--3072407	29	2.2	30	86	2	87	23	16	10	49	1.77
3074322--3074379	28	2.1	28	86	0	80	44	20	15	18	1.86
3076028--3076081	21	2.6	20	83	13	65	74	1	12	11	1.16
3076067--3076129	11	5.5	11	75	11	56	79	1	17	1	0.89
3076852--3076907	29	1.9	29	82	13	71	41	39	3	16	1.65
3078383--3078692	164	1.9	161	85	2	431	29	10	18	41	1.83
3078296--3078700	54	7.4	54	78	4	386	31	10	17	40	1.84
3080116--3080369	118	2.2	118	90	1	393	36	15	22	24	1.94
3080299--3080508	78	2.7	79	79	2	244	34	18	17	29	1.94
3082337--3082399	30	2.1	29	88	2	90	26	11	3	58	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3082411--3082481	29	2.4	30	79	13	76	22	16	9	50	1.74
3087458--3087496	10	3.8	10	89	3	60	33	28	0	38	1.57
3087459--3087500	20	2.1	20	91	8	68	35	28	0	35	1.58
3088350--3088422	29	2.5	29	78	12	78	34	16	4	45	1.66
3088375--3088437	29	2.1	30	82	8	76	33	19	6	41	1.76
3089721--3089771	20	2.5	20	100	0	102	25	19	15	39	1.91
3090558--3090621	20	3.2	20	75	4	58	26	20	21	31	1.98
3092252--3092308	29	2.0	29	100	0	114	24	26	21	28	1.99
3094668--3094782	59	1.9	60	83	1	151	38	17	13	30	1.89
3098887--3099136	123	2.0	122	86	2	349	46	3	6	43	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19