genome.fa.s7816.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3994936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  11  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3204564--3204621	22	2.7	21	82	10	64	31	13	27	27	1.94
3204956--3205162	56	3.6	56	87	6	292	36	8	17	37	1.80
3205312--3205875	81	7.1	80	82	6	614	34	12	21	31	1.90
3205595--3205736	70	2.0	70	87	0	203	33	12	19	34	1.89
3205312--3205875	232	2.4	233	83	7	658	34	12	21	31	1.90
3205514--3205817	151	2.0	151	86	1	421	33	13	20	32	1.91
3214889--3214967	24	3.4	24	72	10	83	29	21	25	24	1.99
3216732--3216767	18	2.0	18	100	0	72	33	27	5	33	1.80
3218803--3218842	21	1.9	21	85	10	55	35	10	2	52	1.48
3220785--3220934	65	2.3	64	83	7	171	28	18	22	30	1.97
3224165--3224206	15	2.7	16	82	10	52	76	2	14	7	1.10
3224186--3224258	13	5.5	13	75	16	60	76	0	15	8	1.00
3224223--3224255	16	2.1	17	88	11	52	72	0	15	12	1.12
3224160--3224257	17	5.4	16	69	25	54	75	1	16	7	1.07
3224993--3225060	28	2.4	28	83	13	95	41	30	7	20	1.80
3230930--3230994	14	4.5	14	69	14	51	36	4	15	43	1.67
3231367--3231410	23	1.9	23	85	0	61	20	22	22	34	1.97
3232175--3232222	22	2.2	21	81	7	51	25	27	31	16	1.97
3235388--3235593	104	2.0	104	86	2	290	25	17	27	29	1.98
3237935--3238068	45	3.0	45	89	5	209	30	23	7	38	1.82
3238166--3238637	58	8.1	58	83	8	437	29	21	12	35	1.91
3238180--3238456	59	4.8	60	78	9	184	30	21	11	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238481--3238577	30	3.3	30	65	21	87	28	24	11	35	1.90
3239703--3239753	25	2.0	25	100	0	102	31	19	7	41	1.80
3245486--3245534	17	2.8	17	78	3	53	73	6	10	10	1.25
3251225--3251273	11	4.2	11	77	12	53	69	2	10	18	1.27
3251590--3251641	23	2.2	24	79	3	61	32	5	26	34	1.80
3258096--3258303	54	3.8	55	79	11	196	33	10	15	40	1.81
3258184--3258303	55	2.2	55	83	4	152	34	10	13	42	1.77
3258247--3258325	22	3.6	23	68	14	67	36	8	13	40	1.76
3259692--3260042	182	1.9	182	84	0	459	34	17	20	27	1.95
3259861--3260867	403	2.5	406	85	3	1334	34	16	19	28	1.94
3259861--3260873	203	5.0	203	84	3	1220	34	16	19	28	1.94
3260801--3260955	42	3.7	42	80	6	163	31	21	17	29	1.96
3266391--3266963	140	4.1	140	85	1	765	27	15	27	29	1.96
3266998--3267106	29	3.5	29	68	16	92	42	13	16	27	1.86
3266962--3267224	65	4.0	65	83	1	328	39	13	18	28	1.89
3273993--3274026	18	1.9	17	88	5	50	47	14	2	35	1.60
3275299--3275359	21	2.9	21	80	0	77	13	16	44	26	1.84
3275747--3275811	3	21.7	3	83	0	67	61	7	0	30	1.24
3280143--3280235	12	7.8	12	72	13	66	48	17	17	17	1.82
3280143--3280249	24	4.5	24	75	11	94	48	16	17	16	1.81
3280141--3280249	48	2.3	48	80	6	132	48	16	17	17	1.81
3289108--3289158	27	2.0	27	85	11	72	15	15	27	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3289443--3289474	5	6.4	5	92	0	55	43	34	18	3	1.66
3297793--3297998	98	2.1	101	87	2	301	32	27	22	18	1.97
3300206--3300263	27	2.0	29	87	9	84	41	10	6	41	1.66
3302590--3302639	17	3.1	17	68	26	54	20	6	22	52	1.68
3304872--3304908	2	18.5	2	100	0	74	48	0	0	51	1.00
3308468--3308507	21	1.9	21	100	0	80	57	5	5	32	1.42
3312321--3312363	22	2.0	22	90	0	68	25	25	25	23	2.00
3314294--3314330	17	2.3	16	90	9	58	18	0	27	54	1.44
3314327--3314368	14	2.9	15	82	13	52	16	2	26	54	1.54
3315023--3315064	21	2.0	22	95	4	77	19	40	28	11	1.87
3315031--3315077	22	2.2	21	88	3	67	19	40	25	14	1.90
3319581--3319846	54	4.9	54	89	1	383	30	17	18	32	1.95
3322631--3322676	21	2.2	21	84	0	56	23	15	26	34	1.94
3322641--3322681	21	2.0	21	90	0	64	19	12	26	41	1.87
3326065--3326111	18	2.5	19	89	3	69	42	8	2	46	1.46
3326191--3326225	18	1.9	18	94	0	61	40	8	2	48	1.49
3326059--3326409	127	2.8	126	92	2	589	39	11	8	41	1.71
3326197--3326237	19	2.2	18	86	4	55	43	7	4	43	1.53
3326209--3326492	46	6.5	45	71	16	197	36	10	10	42	1.73
3326318--3326364	18	2.6	18	89	3	67	42	8	2	46	1.46
3326336--3326488	44	3.4	43	79	6	146	35	10	11	43	1.75
3331621--3331726	27	4.1	26	67	25	64	56	0	3	38	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3331614--3331712	48	2.0	50	92	3	166	57	0	5	37	1.21
3331657--3331696	21	1.9	21	89	0	62	52	0	5	42	1.23
3331662--3331720	28	2.0	30	83	6	77	55	1	3	38	1.26
3331795--3331840	22	2.1	22	100	0	92	23	4	17	54	1.61
3335022--3335069	22	2.2	22	92	0	78	27	27	20	25	1.99
3337471--3337690	59	3.8	59	90	1	336	34	10	20	35	1.87
3337966--3338165	68	3.0	68	91	3	325	30	15	24	30	1.95
3340393--3340455	33	1.9	33	86	0	90	25	19	20	34	1.96
3351303--3351492	95	2.0	95	83	8	244	34	16	23	25	1.95
3351306--3351526	95	2.3	95	81	7	236	35	16	22	25	1.94
3351856--3352086	59	3.9	59	83	3	288	33	9	20	36	1.85
3352352--3352617	68	3.9	68	90	0	433	31	15	23	29	1.95
3352728--3352770	22	2.0	22	86	9	61	37	0	27	34	1.57
3353914--3353956	21	2.0	23	86	9	63	44	2	18	34	1.63
3354212--3354246	18	1.9	18	100	0	70	17	17	34	31	1.93
3358029--3358080	21	2.4	21	81	9	52	44	3	17	34	1.67
3358335--3358369	18	1.9	18	88	11	54	20	14	34	31	1.92
3359573--3359930	68	5.3	68	88	0	527	32	14	24	28	1.95
3360307--3360432	46	2.8	46	76	7	125	44	7	22	25	1.79
3360307--3360410	45	2.3	45	80	3	111	45	8	22	24	1.80
3361698--3361722	2	12.5	2	100	0	50	52	0	0	48	1.00
3362352--3362417	31	2.1	31	100	0	132	21	12	37	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3364272--3364915	125	5.2	125	80	3	607	26	19	19	33	1.96
3365872--3365910	18	2.2	18	86	9	53	51	0	17	30	1.46
3365891--3365955	11	5.5	11	71	28	53	44	0	18	36	1.50
3365851--3365935	43	2.0	43	84	9	111	45	0	17	36	1.49
3365893--3365961	25	2.8	25	95	2	122	44	0	17	37	1.49
3366854--3366897	17	2.7	17	86	10	65	2	15	4	77	1.04
3366882--3366960	41	2.0	40	82	7	97	6	16	1	75	1.06
3372880--3372980	23	4.3	23	83	3	114	17	22	22	36	1.95
3372938--3373001	24	2.7	24	80	7	78	23	21	20	34	1.97
3379773--3379879	23	4.7	23	82	2	126	20	20	25	33	1.97
3381270--3381302	16	2.1	16	88	11	50	69	0	0	30	0.88
3382852--3382939	30	2.9	29	78	15	90	40	9	22	27	1.84
3382895--3382956	29	2.1	30	91	8	101	38	9	20	30	1.85
3386413--3386528	21	5.6	21	85	4	155	20	19	27	31	1.97
3386412--3386553	42	3.4	42	86	3	166	21	19	25	33	1.97
3386480--3386567	19	4.4	20	70	13	56	27	20	19	32	1.97
3386438--3386567	61	2.1	60	81	5	145	24	20	23	31	1.98
3387286--3387355	21	3.3	20	75	18	72	38	18	17	25	1.92
3387307--3387481	21	8.6	20	72	13	117	36	22	18	22	1.95
3387282--3387458	40	4.3	41	88	2	259	36	20	19	23	1.95
3387389--3387523	61	2.2	61	91	0	216	34	25	19	20	1.96
3387282--3387458	82	2.2	82	87	4	232	36	20	19	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3387389--3387519	21	6.4	20	76	7	104	34	25	19	21	1.96
3387532--3387584	21	2.5	21	84	0	70	20	20	28	30	1.98
3394176--3394231	15	3.6	15	79	9	67	42	12	12	32	1.80
3394179--3394229	17	3.1	17	77	11	61	43	11	9	35	1.75
3394627--3394681	13	4.2	13	75	13	58	49	12	3	34	1.59
3394667--3394765	33	3.0	33	94	1	164	45	15	7	32	1.73
3394760--3394799	21	1.9	21	94	0	71	47	7	15	30	1.72
3397071--3397116	12	3.6	12	81	16	56	17	19	17	45	1.85
3397070--3397109	15	2.9	14	85	14	57	20	17	15	47	1.83
3398054--3398106	9	6.2	9	80	10	58	77	0	1	20	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14