genome.fa.s7816.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3994936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1138473--1138843	203	1.8	204	84	1	503	38	13	19	29	1.89
1138678--1138762	37	2.3	36	87	2	116	40	15	20	24	1.91
1138473--1138849	102	3.7	101	87	2	477	38	12	19	29	1.89
1138769--1138843	37	2.0	38	86	2	107	36	14	20	29	1.92
1140503--1140545	13	3.3	13	81	18	54	2	16	4	76	1.05
1141782--1141814	7	4.7	7	92	0	57	57	12	15	15	1.65
1143914--1143975	9	7.1	8	78	14	52	75	0	1	22	0.88
1143921--1143972	18	3.1	17	78	8	61	75	0	1	23	0.91
1143921--1143972	4	12.2	4	80	15	52	75	0	1	23	0.91
1143921--1144007	33	2.5	33	81	5	93	71	0	2	26	0.98
1143921--1143985	18	3.4	17	75	22	58	72	0	1	26	0.94
1143943--1144025	23	3.7	23	73	13	66	66	1	2	30	1.12
1143918--1143998	28	2.8	28	83	9	83	71	0	2	25	0.98
1144071--1144128	2	31.0	2	75	19	54	55	0	3	41	1.17
1144071--1144128	13	4.4	14	72	20	54	55	0	3	41	1.17
1144074--1144124	25	2.0	25	88	7	75	56	0	3	39	1.18
1144094--1144133	14	2.7	14	92	7	62	62	0	2	35	1.09
1157360--1157393	2	17.5	2	87	6	52	52	0	0	47	1.00
1160256--1160314	22	2.8	21	75	14	59	10	11	1	76	1.10
1160621--1160662	22	2.0	21	85	4	57	23	2	33	40	1.68
1164663--1164701	20	1.9	21	84	5	53	46	17	10	25	1.80
1165928--1165978	25	2.0	25	81	7	59	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169753--1169857	37	2.8	37	88	0	156	40	15	14	30	1.87
1170375--1170412	19	2.0	19	85	10	51	31	2	0	65	1.06
1170375--1170441	21	3.2	22	76	19	63	31	4	0	64	1.14
1170569--1170624	18	3.2	17	73	12	51	21	0	5	73	1.03
1170717--1170767	21	2.5	20	81	12	59	15	5	0	78	0.93
1179415--1179454	3	13.7	3	84	5	55	0	32	0	67	0.91
1187013--1187094	35	2.4	34	84	7	105	39	7	23	30	1.82
1200291--1200345	26	2.1	26	100	0	110	18	20	18	43	1.88
1208473--1208510	18	2.2	17	86	9	51	76	2	10	10	1.12
1217397--1217436	16	2.5	16	100	0	80	0	55	0	45	0.99
1217767--1218200	195	2.2	194	85	2	575	41	12	13	32	1.81
1218864--1218901	20	1.9	20	94	0	67	36	18	26	18	1.94
1218863--1218911	20	2.5	20	82	0	62	36	20	24	18	1.94
1225377--1225477	45	2.3	45	84	1	132	31	16	20	30	1.95
1225786--1225834	18	2.7	18	81	9	55	59	2	4	34	1.28
1225793--1225834	19	2.2	19	87	8	59	59	2	4	33	1.31
1225804--1225907	39	2.6	39	71	14	88	48	5	4	41	1.48
1238989--1239047	24	2.5	24	94	0	100	35	15	16	32	1.90
1239837--1239875	21	1.9	20	84	5	51	46	5	0	48	1.24
1242114--1242140	2	13.5	2	100	0	54	48	0	0	51	1.00
1243208--1243305	30	3.3	30	79	0	88	29	15	26	28	1.96
1249574--1249715	30	4.6	30	80	6	158	30	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1249575--1249755	94	1.9	94	86	2	256	28	14	28	27	1.96
1250963--1250991	10	2.9	10	100	0	58	68	0	31	0	0.89
1257656--1257885	41	5.6	41	69	13	125	38	17	10	33	1.83
1257656--1257907	123	2.1	122	79	3	265	38	17	9	34	1.82
1264878--1264938	20	2.9	21	82	7	70	26	31	24	18	1.97
1265639--1265676	12	3.2	12	96	0	67	26	52	0	21	1.47
1268688--1268742	24	2.3	24	100	0	110	40	21	5	32	1.76
1269325--1269351	14	1.9	14	100	0	54	40	14	0	44	1.46
1275586--1275755	91	1.9	89	85	2	232	30	24	8	36	1.86
1275586--1275755	45	3.8	45	86	2	234	30	24	8	36	1.86
1282333--1282360	2	14.0	2	100	0	56	50	0	0	50	1.00
1286851--1286879	2	14.5	2	100	0	58	51	0	0	48	1.00
1287100--1287139	16	2.5	16	100	0	80	32	15	5	47	1.66
1292318--1292352	17	2.0	18	88	5	54	25	22	5	45	1.74
1295633--1297191	836	1.9	836	88	3	2361	35	16	11	36	1.85
1296937--1297026	30	3.0	28	75	13	74	36	14	5	43	1.69
1302572--1302609	19	2.0	20	84	5	51	34	0	28	36	1.58
1303053--1303105	21	2.5	21	90	9	81	20	3	22	52	1.62
1304094--1304120	2	13.5	2	100	0	54	51	0	0	48	1.00
1312441--1312486	24	1.9	24	81	0	56	28	21	21	28	1.99
1316125--1316164	17	2.4	16	88	12	62	20	12	0	67	1.22
1320641--1320720	30	2.6	31	75	16	87	45	5	15	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1331026--1331127	22	4.7	22	84	10	131	20	25	30	23	1.99
1344037--1344085	24	2.0	24	88	0	71	28	10	22	38	1.87
1350273--1350389	59	2.0	59	87	0	171	29	23	15	31	1.95
1356734--1356929	59	3.3	58	79	5	198	29	23	16	30	1.97
1363628--1363787	41	3.9	41	89	0	221	36	20	11	31	1.89
1363653--1363831	82	2.2	82	81	2	207	36	18	12	31	1.88
1370693--1370750	22	2.7	23	80	17	63	37	22	15	24	1.93
1370711--1370750	20	1.9	21	85	10	55	42	22	12	22	1.87
1372834--1372984	54	2.8	54	87	0	203	37	17	13	32	1.88
1386916--1387223	54	5.7	54	86	2	395	37	15	13	33	1.87
1386916--1387223	162	1.9	162	89	1	483	37	15	13	33	1.87
1392947--1392986	20	1.9	22	85	10	57	25	5	17	52	1.64
1392942--1392993	22	2.3	24	75	18	58	21	3	19	55	1.58
1394573--1394635	31	2.0	31	90	0	99	19	3	36	41	1.67
1398895--1398949	27	2.0	27	100	0	110	18	30	25	25	1.98
1412189--1412286	49	2.0	48	98	2	187	40	8	30	20	1.81
1413380--1413686	152	2.0	154	95	4	559	29	22	20	27	1.98
1420310--1420363	21	2.6	22	83	13	62	35	1	12	50	1.52
1423394--1423431	15	2.6	15	87	4	51	42	2	7	47	1.46
1423816--1423868	23	2.3	23	86	0	70	49	16	22	11	1.78
1423886--1423936	24	2.2	23	82	10	59	72	3	7	15	1.23
1436548--1436699	77	1.9	79	84	2	200	41	8	5	44	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1438932--1439159	112	2.0	111	88	0	339	28	15	19	36	1.92
1441044--1441219	46	3.8	46	86	0	244	25	15	14	44	1.85
1441225--1441322	49	2.0	49	81	0	115	30	22	15	31	1.95
1441572--1441939	54	6.8	54	86	3	501	33	16	11	38	1.84
1441571--1441939	161	2.3	162	88	3	548	34	15	11	38	1.84
1447178--1447978	81	9.9	81	88	1	1106	36	11	20	31	1.88
1453094--1453187	41	2.3	41	83	3	127	37	25	6	30	1.81
1462519--1462554	10	3.6	10	84	0	54	86	0	11	2	0.68
1465727--1465771	17	2.6	17	96	0	81	55	0	13	31	1.38
1467335--1467449	54	2.1	54	80	3	124	28	19	16	35	1.93
1468490--1468542	24	2.2	24	96	0	97	32	9	39	18	1.83
1477116--1477268	41	3.7	41	80	3	155	35	21	9	32	1.86
1483118--1483159	21	2.0	21	100	0	84	33	19	4	42	1.72
1483199--1483276	41	1.9	41	89	5	122	34	28	8	28	1.87
1497319--1497424	54	1.9	55	81	5	126	30	16	16	36	1.91
1507184--1507337	41	3.8	41	83	1	139	34	23	10	31	1.88
1509718--1509810	44	2.1	44	90	4	143	27	23	7	40	1.81
1514581--1514665	34	2.5	34	94	0	152	42	5	8	43	1.58
1516253--1516293	21	2.0	21	90	0	64	24	36	12	26	1.91
1519353--1519431	21	3.8	21	88	5	115	32	22	12	31	1.92
1525373--1525402	14	2.1	14	93	0	51	33	16	30	20	1.94
1537062--1537238	90	2.0	89	90	1	282	38	10	6	44	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1543609--1543785	90	2.0	89	92	3	293	37	11	7	43	1.69
1545120--1545659	44	12.2	45	91	3	821	32	23	6	37	1.80
1545120--1545659	89	6.1	89	91	3	840	32	23	6	37	1.80
1545120--1545660	222	2.4	220	91	3	854	32	23	6	37	1.80
1545792--1545903	59	1.9	59	81	7	138	34	18	11	34	1.87
1545938--1546213	116	2.4	117	90	0	419	32	23	9	34	1.87
1545894--1546214	59	5.5	59	71	8	199	30	22	9	36	1.87
1550624--1550654	7	4.4	7	91	0	53	45	12	25	16	1.83
1551188--1551813	44	14.1	45	89	2	865	31	23	6	37	1.81
1551191--1551814	89	7.0	89	89	2	880	32	23	6	37	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14