genome.fa.s7816.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3994936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
796575--796603	9	3.3	9	90	9	51	0	17	0	82	0.66
796591--796645	24	2.3	24	90	0	83	9	16	12	61	1.55
807322--807352	14	2.2	14	100	0	62	80	0	19	0	0.71
824924--824988	28	2.3	28	97	0	121	32	18	4	44	1.70
826677--826731	23	2.3	25	84	6	78	61	12	16	9	1.55
832826--832851	13	2.0	13	100	0	52	15	23	23	38	1.92
833545--833607	24	2.7	23	70	7	56	65	12	12	9	1.48
834574--834611	15	2.5	15	83	8	51	57	2	21	18	1.52
835086--835506	231	1.8	231	98	0	815	32	13	22	30	1.93
841176--841210	19	1.9	17	88	11	52	77	5	11	5	1.12
845994--846047	28	2.0	27	82	10	65	9	20	3	66	1.35
846013--846062	21	2.4	21	86	10	75	6	14	2	78	1.03
852318--852358	14	2.9	14	92	0	64	19	41	9	29	1.83
855946--855997	22	2.5	20	82	14	54	40	0	1	57	1.10
859132--859189	19	3.0	21	75	14	61	13	25	3	56	1.53
859126--859176	21	2.6	19	80	14	59	15	25	1	56	1.50
863795--863897	20	5.1	20	73	9	75	31	22	13	33	1.93
869475--869529	21	2.6	21	91	2	74	18	20	1	60	1.46
869483--869529	21	2.2	21	96	0	85	14	21	2	61	1.43
871853--871899	18	2.7	17	83	6	67	40	6	10	42	1.65
873860--873884	13	1.9	13	100	0	50	76	0	8	16	1.02
882337--882389	20	2.8	19	80	8	72	18	20	30	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883536--883574	20	2.0	20	89	0	60	41	20	7	30	1.80
886408--886476	28	2.5	28	87	0	102	21	18	28	30	1.97
886571--886629	28	2.1	27	81	12	66	45	6	18	28	1.75
887121--887172	27	2.0	26	88	11	79	25	0	9	65	1.23
887982--888034	15	3.8	14	80	14	65	37	1	1	58	1.20
888142--888177	18	2.0	18	100	0	72	33	27	11	27	1.91
890765--890805	19	2.2	19	86	0	55	36	12	12	39	1.80
892786--892810	2	12.5	2	100	0	50	48	0	0	52	1.00
893398--893464	29	2.2	29	84	5	80	41	7	2	47	1.47
894166--894213	6	7.8	6	95	4	87	52	0	47	0	1.00
894166--894213	19	2.6	18	93	6	87	52	0	47	0	1.00
896216--896314	50	2.0	51	93	2	173	33	23	25	18	1.97
908306--908355	25	2.0	25	84	7	66	20	22	0	58	1.40
908593--908624	17	1.9	17	93	6	57	78	6	15	0	0.95
915132--915189	22	2.7	22	73	21	59	46	6	3	43	1.47
918218--918301	17	4.8	18	79	2	73	28	9	17	44	1.80
925364--925581	108	2.0	108	90	0	346	43	15	14	26	1.85
931152--931284	44	3.0	44	82	2	160	39	26	8	25	1.84
931156--931279	21	5.7	21	69	14	81	41	25	8	25	1.84
944591--945078	81	6.1	80	85	7	582	33	21	10	34	1.87
954697--954742	24	1.9	24	82	8	58	10	13	4	71	1.27
956315--956403	44	2.0	44	100	0	178	42	6	4	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958556--958612	23	2.5	23	88	0	96	35	7	19	38	1.79
958958--959664	199	3.6	199	88	1	1037	30	14	14	39	1.87
963696--963754	18	3.5	17	76	21	61	32	5	40	22	1.75
963707--963752	15	2.9	15	81	15	56	26	4	41	28	1.74
964142--965211	200	5.4	200	87	3	1427	32	14	14	38	1.86
964926--964964	20	2.0	20	89	0	60	30	15	10	43	1.80
965124--965398	128	2.1	128	82	6	326	32	13	10	43	1.79
968095--968144	25	2.0	25	100	0	100	8	20	16	56	1.65
971279--971330	20	2.6	20	75	0	59	23	15	13	48	1.80
970694--971354	182	3.6	181	85	4	857	27	16	13	41	1.86
975725--975762	20	1.9	20	88	0	58	52	18	0	28	1.45
978483--978525	19	2.1	21	91	8	72	39	4	18	37	1.72
982406--982445	18	2.2	19	86	4	55	37	5	0	57	1.21
984037--984067	14	2.2	14	94	0	53	74	0	0	25	0.82
986659--986697	20	2.0	19	85	5	51	33	15	7	43	1.75
998210--998249	15	2.7	15	88	3	55	30	20	12	37	1.89
1002693--1002735	21	2.0	21	82	13	52	48	9	11	30	1.71
1005484--1005514	16	1.9	16	93	0	53	35	29	29	6	1.82
1005502--1005705	109	1.8	111	86	7	299	34	20	15	29	1.93
1009398--1009520	32	3.9	31	89	2	185	30	18	18	32	1.95
1014083--1014107	2	12.5	2	100	0	50	52	0	0	48	1.00
1014298--1014420	32	3.9	31	88	2	176	28	17	19	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019199--1019321	32	3.9	31	87	2	176	30	18	19	31	1.96
1023834--1023864	2	15.5	2	100	0	62	51	0	0	48	1.00
1024055--1024177	32	3.9	31	85	6	169	30	17	19	33	1.95
1024796--1024891	23	4.3	22	72	6	77	14	22	26	36	1.93
1027866--1027927	32	1.9	32	83	0	79	22	20	19	37	1.95
1028793--1028846	20	2.8	20	75	8	58	40	0	3	55	1.17
1028867--1028893	2	13.5	2	100	0	54	51	0	0	48	1.00
1036277--1036313	18	2.1	18	100	0	74	21	21	10	45	1.82
1036373--1036434	29	2.2	28	94	2	106	41	29	12	16	1.85
1049278--1049309	16	2.1	15	94	5	55	18	15	0	65	1.27
1052408--1052441	17	1.9	18	94	5	61	73	5	11	8	1.24
1057641--1057687	22	2.0	24	88	8	71	55	6	4	34	1.45
1059778--1059825	2	24.5	2	91	4	80	52	0	0	47	1.00
1060048--1060089	22	1.9	22	85	0	57	35	38	2	23	1.68
1060136--1060184	14	3.3	14	76	15	53	22	14	2	61	1.43
1068001--1068533	44	12.3	43	77	10	464	45	8	21	24	1.79
1068001--1068662	44	15.3	43	76	11	423	46	8	20	24	1.78
1068001--1068662	128	5.1	128	78	8	576	46	8	20	24	1.78
1068064--1068662	257	2.3	254	78	9	631	46	8	20	25	1.78
1067996--1068533	86	6.2	88	76	10	330	45	8	21	24	1.79
1068831--1068880	20	2.6	19	84	6	57	44	2	6	48	1.39
1069960--1070000	2	21.5	2	85	9	59	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070011--1070181	51	3.4	50	82	6	204	24	12	18	43	1.85
1070060--1070189	47	2.7	48	79	11	158	23	11	18	46	1.82
1072867--1072908	21	2.0	21	95	4	77	38	30	14	16	1.89
1075834--1075880	22	2.1	22	84	7	60	80	10	6	2	0.96
1087050--1087454	54	7.5	54	86	1	526	33	19	17	30	1.94
1087880--1087922	22	1.9	23	85	4	61	20	27	16	34	1.94
1087910--1087963	19	2.9	19	94	2	92	22	31	16	29	1.96
1094134--1094314	54	3.4	53	86	3	227	34	19	16	29	1.94
1094653--1094679	13	2.1	13	100	0	54	29	22	14	33	1.94
1094708--1094768	22	2.9	20	76	11	68	26	31	14	27	1.95
1096407--1097461	547	1.9	546	87	2	1521	33	10	17	37	1.85
1099097--1100339	614	2.0	614	96	0	2310	30	8	23	37	1.85
1103730--1103832	53	1.9	53	90	0	161	33	18	18	30	1.95
1104379--1104409	15	2.0	16	93	6	55	19	6	3	70	1.22
1104450--1104499	11	4.2	12	75	10	50	26	4	0	70	1.05
1112725--1113022	45	6.6	45	85	4	368	31	21	9	37	1.85
1112725--1113022	91	3.3	91	86	5	381	31	21	9	37	1.85
1112712--1113022	136	2.3	135	83	6	396	31	21	9	37	1.85
1113438--1113482	22	2.1	21	88	8	65	31	24	15	28	1.96
1113438--1113508	19	3.5	22	75	14	71	33	22	12	30	1.91
1113534--1113576	20	2.2	20	83	8	52	20	32	11	34	1.89
1113991--1114027	17	2.2	17	100	0	74	35	18	5	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121362--1121643	108	2.6	107	90	1	431	29	20	17	32	1.95
1121362--1121643	54	5.2	54	86	3	381	29	20	17	32	1.95
1123897--1123940	20	2.2	20	84	8	54	25	29	18	27	1.98
1135474--1135566	26	3.6	24	74	17	71	75	5	4	15	1.14
1135477--1135555	34	2.3	34	75	12	83	75	6	3	13	1.13
1135736--1135791	26	2.2	25	84	9	69	75	0	1	23	0.90
1135931--1135967	14	2.8	14	92	8	60	75	0	0	24	0.80
1138325--1138473	65	2.3	64	85	8	185	38	8	19	32	1.82
1138435--1138849	36	12.0	36	70	16	279	38	13	19	29	1.89
1138447--1138538	37	2.5	36	91	1	139	42	16	20	20	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14