genome.fa.s7816.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3994936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3942676--3942784	45	2.4	45	89	3	164	27	22	20	30	1.98
3942554--3943038	121	3.9	121	88	5	555	24	21	19	34	1.97
3942798--3943106	45	6.9	45	90	1	476	23	22	19	34	1.96
3943284--3943323	10	3.9	11	81	15	50	40	0	0	60	0.97
3943284--3943326	21	2.0	21	86	8	61	41	0	0	58	0.98
3944782--3944823	21	2.0	22	86	13	61	40	2	0	57	1.12
3946161--3946263	24	4.4	23	80	3	100	23	23	25	28	2.00
3947862--3947935	31	2.4	31	88	0	103	54	17	10	17	1.71
3950701--3950824	34	3.6	34	85	1	158	38	3	4	54	1.36
3951347--3951416	21	3.3	20	90	5	95	18	27	35	18	1.94
3951420--3951488	21	3.3	21	93	0	111	21	13	39	26	1.90
3952028--3952073	6	8.0	6	77	18	53	65	4	0	30	1.12
3953221--3953299	33	2.4	32	81	12	90	59	1	0	39	1.06
3956820--3956891	21	3.4	21	86	7	101	25	25	30	19	1.98
3958669--3958769	31	3.3	31	78	9	84	59	0	0	40	0.97
3958976--3959115	60	2.3	60	80	6	158	24	30	27	17	1.97
3959718--3959759	16	2.6	16	96	0	75	40	4	19	35	1.72
3966811--3966845	14	2.5	14	85	0	52	0	22	0	77	0.78
3968066--3968090	2	12.5	2	100	0	50	52	0	0	48	1.00
3968915--3968978	22	2.9	22	80	0	74	28	15	20	35	1.93
3971233--3971433	94	2.1	94	88	2	289	35	16	23	23	1.95
3971840--3972075	87	2.8	83	90	6	356	33	10	25	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3971847--3972087	45	5.7	44	72	16	213	32	10	26	30	1.90
3972073--3972172	48	2.1	48	86	0	137	41	14	22	23	1.89
3972083--3972193	48	2.3	48	82	1	134	44	13	21	20	1.86
3972543--3972714	68	2.5	68	91	0	272	29	15	25	30	1.95
3972719--3972806	29	3.0	29	90	3	133	45	10	21	22	1.82
3972938--3972970	2	16.5	2	100	0	66	51	0	0	48	1.00
3974624--3974667	20	2.2	20	87	0	61	27	9	18	45	1.79
3975027--3975066	19	2.0	21	85	9	57	55	2	20	22	1.56
3982333--3982383	19	2.6	20	90	3	77	43	5	15	35	1.71
3986511--3986561	19	2.6	20	90	3	77	43	5	15	35	1.71
3991455--3991594	26	5.4	26	82	3	174	27	24	14	34	1.94
3994535--3994568	18	1.9	18	88	5	52	29	17	23	29	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!