genome.fa.s7816.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3994936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1835042--1835266	99	2.3	99	82	3	256	24	20	20	33	1.97
1835266--1835366	53	1.9	53	87	0	148	24	17	22	34	1.96
1841983--1842028	18	2.6	18	83	13	60	71	2	23	2	1.08
1849256--1849321	27	2.4	27	89	0	105	45	12	6	36	1.66
1857625--1857705	41	2.0	41	85	0	108	35	23	8	32	1.85
1857654--1857991	41	8.3	41	83	0	408	35	20	10	33	1.87
1858052--1858346	41	7.2	41	85	5	364	35	18	12	33	1.89
1858127--1858375	123	2.0	123	82	4	306	38	18	12	30	1.88
1866371--1866727	41	8.7	41	82	3	315	35	20	12	32	1.90
1866416--1866727	82	3.8	82	83	4	362	34	19	13	33	1.90
1866417--1866727	123	2.5	123	81	5	378	34	19	13	33	1.90
1875933--1876158	50	4.6	51	82	4	277	45	14	14	26	1.83
1875933--1876156	101	2.3	100	82	3	283	45	14	14	25	1.83
1891393--1891474	22	3.7	22	74	6	85	28	21	21	28	1.99
1892674--1892749	21	3.7	21	78	5	75	26	17	21	35	1.95
1896399--1896466	28	2.4	28	80	4	75	29	0	26	44	1.55
1896667--1896736	27	2.5	28	79	4	88	34	0	21	44	1.53
1895821--1896908	279	3.9	280	79	7	1090	47	6	12	33	1.67
1896881--1896943	28	2.2	29	91	5	103	52	3	14	30	1.57
1899207--1899270	16	3.9	16	87	6	83	29	21	12	35	1.91
1899207--1899270	34	1.9	32	84	6	83	29	21	12	35	1.91
1905436--1905550	59	1.9	59	82	0	140	31	14	20	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1906231--1907048	406	2.0	407	93	0	1413	34	10	20	35	1.86
1909603--1909668	30	2.2	30	84	12	84	43	6	15	34	1.71
1910755--1910804	20	2.5	20	84	12	59	36	0	22	42	1.54
1912442--1912578	68	2.0	68	100	0	274	51	1	8	37	1.42
1912726--1912755	13	2.3	13	94	0	51	30	0	0	70	0.88
1919842--1919949	56	2.0	52	86	10	148	31	17	29	21	1.96
1920722--1920823	50	2.0	51	98	1	197	33	19	24	22	1.97
1922066--1922184	59	2.0	59	100	0	238	21	18	26	32	1.97
1923008--1923059	18	2.9	17	83	11	59	80	3	13	1	0.93
1923108--1923139	16	1.9	17	93	6	57	81	3	12	3	0.93
1924123--1924244	43	2.8	43	87	0	181	31	30	13	24	1.94
1924298--1924457	85	1.9	85	94	0	284	35	26	15	23	1.94
1924322--1924458	43	3.2	43	68	13	129	37	26	16	20	1.93
1924675--1924847	94	1.8	94	86	0	247	36	24	17	21	1.95
1924904--1925200	152	2.0	144	91	8	481	30	28	17	22	1.97
1925525--1925682	83	1.9	84	81	3	194	34	25	15	24	1.95
1925990--1926030	3	13.3	3	89	5	64	29	0	0	70	0.87
1925990--1926041	9	5.8	9	82	6	61	26	0	0	73	0.84
1925979--1926036	28	2.1	28	87	6	82	31	1	0	67	1.01
1931460--1931963	54	9.3	54	88	0	641	33	17	18	30	1.94
1932003--1932039	15	2.5	15	95	0	65	54	10	5	29	1.57
1934296--1934341	17	2.7	18	76	10	51	30	6	19	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1934383--1934428	17	2.7	17	82	0	65	34	15	4	45	1.66
1935099--1935139	21	1.9	22	85	14	59	36	12	7	43	1.70
1935821--1936212	195	2.0	195	97	0	748	36	18	15	29	1.91
1941062--1941319	133	1.9	133	92	0	435	34	20	18	25	1.95
1941920--1941985	23	2.9	23	74	0	69	30	24	24	21	1.99
1953125--1953171	24	1.9	25	86	4	69	57	19	12	10	1.64
1958183--1958210	3	9.3	3	100	0	56	32	0	0	67	0.91
1961494--1961707	45	4.8	45	87	4	299	39	11	22	26	1.88
1964686--1964729	21	2.1	21	100	0	88	18	9	29	43	1.80
1966764--1966981	45	4.8	45	91	0	346	40	11	23	25	1.87
1966963--1967087	49	2.6	47	81	6	135	47	12	17	23	1.81
1969476--1969520	2	22.5	2	100	0	90	51	0	0	48	1.00
1971674--1971728	22	2.7	21	83	10	69	29	16	25	29	1.97
1972154--1972369	45	4.8	45	90	0	342	39	11	21	26	1.88
1976663--1976695	2	16.5	2	100	0	66	48	0	0	51	1.00
1977024--1977097	11	6.5	11	72	20	62	67	5	1	25	1.20
1977117--1977164	16	3.0	17	85	8	57	60	4	6	29	1.40
1977582--1977670	27	3.3	27	90	6	128	29	19	13	38	1.89
1978438--1978505	3	22.0	3	82	11	75	61	0	1	36	1.05
1978438--1978504	19	3.6	19	90	6	93	61	0	1	37	1.05
1980146--1980187	22	1.9	22	90	9	68	14	11	4	69	1.34
1985408--1985461	22	2.5	22	96	0	99	35	14	14	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1993226--1993279	13	4.0	14	90	9	78	55	12	16	14	1.69
1993226--1993275	21	2.5	20	90	6	82	58	12	16	14	1.64
1993226--1993279	6	8.0	7	84	15	78	55	12	16	14	1.69
1995600--1995679	3	28.7	3	75	18	50	70	3	0	26	1.04
1995595--1995678	11	7.4	11	76	17	82	70	3	1	25	1.11
1995600--1995678	21	3.5	21	77	16	77	70	3	0	25	1.03
1995693--1995730	17	2.4	17	86	8	53	60	5	5	28	1.40
1997068--1997149	3	27.0	3	85	7	112	62	0	0	37	0.96
1997067--1997148	34	2.4	34	95	2	148	60	0	0	39	0.96
2001345--2001374	3	10.3	3	92	7	53	66	0	0	33	0.92
2001341--2001374	17	2.1	16	94	5	59	67	0	0	32	0.91
2001951--2001985	2	17.5	2	100	0	70	48	0	0	51	1.00
2002306--2002332	2	13.5	2	100	0	54	51	0	0	48	1.00
2002435--2002462	14	2.0	14	100	0	56	64	0	0	35	0.94
2004870--2004939	23	3.0	23	82	0	95	18	25	24	31	1.98
2004870--2004966	46	2.1	46	84	0	122	20	24	20	34	1.97
2005095--2005154	18	3.4	17	84	6	75	41	1	21	35	1.63
2005097--2005154	6	9.7	6	78	0	62	43	1	20	34	1.62
2009400--2009501	23	4.4	23	75	2	89	17	21	26	34	1.96
2009397--2009487	46	2.0	46	86	0	128	18	21	24	35	1.96
2009621--2009672	6	8.7	6	78	0	50	44	3	21	30	1.70
2009612--2009671	18	3.3	18	81	6	68	46	5	21	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2009702--2009741	2	20.0	2	100	0	80	0	0	50	50	1.00
2016095--2016195	42	2.4	41	81	3	130	30	22	23	22	1.99
2015639--2017700	216	9.6	215	92	1	3184	32	20	16	31	1.94
2016521--2016627	42	2.6	41	77	2	115	32	21	20	25	1.97
2015639--2017700	427	4.8	427	92	1	3182	32	20	16	31	1.94
2017744--2017849	37	2.9	37	83	6	110	18	16	20	43	1.88
2028737--2028860	65	1.9	65	91	0	203	50	13	6	29	1.67
2035189--2035361	90	1.9	90	96	0	319	35	11	7	45	1.69
2038862--2038999	74	1.9	73	86	4	197	22	18	27	31	1.97
2043971--2044012	21	2.0	21	90	0	66	26	26	21	26	1.99
2044140--2044206	34	2.0	34	88	5	100	19	23	34	22	1.97
2044175--2044233	22	2.9	19	82	12	66	15	30	33	20	1.93
2047710--2047773	15	4.0	15	74	18	58	21	25	32	20	1.97
2047709--2047793	34	2.5	34	88	1	125	18	24	34	22	1.96
2047777--2047822	24	1.9	24	90	0	74	10	23	43	21	1.84
2049413--2049460	23	2.1	23	88	0	69	37	8	10	43	1.69
2049778--2049881	37	2.8	37	88	0	145	40	14	14	30	1.86
2050551--2050607	21	2.7	21	83	2	60	29	3	0	66	1.08
2050556--2050609	19	2.8	19	85	0	63	31	3	0	64	1.11
2050572--2050615	21	2.0	22	91	4	72	25	2	0	72	0.96
2050710--2050765	19	2.9	19	75	19	62	23	8	1	66	1.30
2055045--2055094	14	3.6	14	79	15	59	78	8	14	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2056681--2057616	106	9.0	106	86	5	1246	33	24	18	23	1.96
2058668--2058717	14	3.3	14	79	17	55	18	8	4	70	1.28
2058817--2058902	22	3.8	22	74	14	77	31	3	1	63	1.18
2058880--2058930	15	3.5	15	74	15	52	27	3	0	68	1.07
2058867--2058932	20	3.2	20	75	25	59	27	3	0	69	1.03
2059016--2059069	21	2.6	20	80	8	63	24	9	0	66	1.20
2059170--2059313	70	2.0	72	97	2	274	37	12	13	36	1.83
2064718--2064763	23	2.0	23	91	4	76	41	15	0	43	1.46
2070361--2070390	15	1.9	16	93	6	53	20	40	6	33	1.78
2072223--2072272	21	2.4	21	86	0	73	30	16	20	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14