genome.fa.s7816.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007816.1 Hibiscus syriacus cultivar Beakdansim tig00110151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3994936

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1594 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352245--352286	9	4.8	9	83	16	61	80	0	19	0	0.70
352245--352286	6	7.2	6	79	15	52	80	0	19	0	0.70
353691--353723	17	1.9	17	93	0	57	33	30	0	36	1.58
358207--358235	15	2.0	15	93	6	51	75	3	20	0	0.94
358679--358813	72	1.9	72	98	0	261	37	26	15	20	1.92
367961--368040	35	2.2	37	91	4	128	31	37	3	27	1.74
368648--368701	16	3.4	16	75	10	56	14	16	0	68	1.21
370106--370185	35	2.2	37	91	4	128	31	37	3	27	1.74
372415--372491	36	2.1	36	88	4	111	32	5	33	28	1.79
376919--377011	36	2.6	36	86	5	118	30	5	36	27	1.79
379164--379232	33	2.1	33	83	5	86	31	1	36	30	1.67
379218--379314	13	8.0	12	72	22	62	28	3	37	30	1.73
379203--379315	36	3.2	36	92	1	174	27	3	36	32	1.74
381467--381535	33	2.1	33	83	5	86	31	1	36	30	1.67
381521--381617	13	8.0	12	72	22	62	28	3	37	30	1.73
381506--381618	36	3.2	36	92	1	174	27	3	36	32	1.74
383003--383855	429	2.0	429	91	0	1368	25	20	18	35	1.96
387183--387212	12	2.4	13	94	5	53	0	23	0	76	0.78
387568--387636	33	2.1	33	83	5	86	31	1	36	30	1.67
387622--387718	13	8.0	12	72	22	62	28	3	37	30	1.73
387607--387719	36	3.2	36	92	1	174	27	3	36	32	1.74
391640--391704	28	2.3	28	78	5	69	38	3	10	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395121--395178	19	3.0	19	78	14	57	63	0	15	20	1.30
398756--398815	13	4.6	12	76	15	57	3	20	3	73	1.12
401341--401392	21	2.6	21	90	6	81	34	13	5	46	1.67
423141--423247	55	1.9	56	96	1	198	44	5	14	34	1.69
427677--427722	19	2.4	19	96	0	83	65	0	23	10	1.24
429560--429611	21	2.6	20	87	6	70	34	13	5	46	1.67
433224--433266	23	1.9	21	81	13	50	34	13	18	32	1.90
437636--437682	18	2.5	19	82	10	60	80	2	14	2	0.89
437636--437717	21	4.0	21	75	12	73	74	2	21	1	1.01
437630--437716	13	6.5	13	70	16	61	74	3	20	1	1.03
437630--437716	30	2.9	29	75	10	77	74	3	20	1	1.03
443495--443551	20	2.8	21	91	2	98	43	10	7	38	1.66
446055--446103	19	2.5	20	78	21	59	24	8	0	67	1.18
452462--452510	19	2.5	20	78	21	59	24	8	0	67	1.18
492081--492110	12	2.4	13	94	5	53	0	23	0	76	0.78
496552--496581	12	2.4	13	94	5	53	0	23	0	76	0.78
531178--531226	22	2.2	22	85	0	62	77	4	6	12	1.09
539193--539217	12	2.1	12	100	0	50	0	24	0	76	0.80
550133--550175	17	2.5	17	100	0	86	34	27	13	23	1.93
551189--551242	24	2.3	23	81	9	65	61	14	16	7	1.55
552411--552512	44	2.3	44	98	0	195	38	17	15	28	1.91
553002--553037	18	1.9	20	88	11	58	63	0	16	19	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552996--553045	20	2.4	21	81	18	61	66	0	12	22	1.24
558268--558349	13	6.4	12	71	26	62	3	15	3	76	1.06
558268--558344	20	3.9	21	70	23	69	3	15	2	77	1.02
560693--560727	11	3.0	11	88	12	52	28	37	0	34	1.58
562029--562073	22	2.0	22	100	0	90	17	22	22	37	1.94
565474--565530	11	4.9	11	78	18	62	31	35	0	33	1.58
566833--566877	22	2.0	22	100	0	90	17	22	22	37	1.94
570301--570367	13	5.6	11	74	22	64	32	34	2	29	1.73
570273--570380	36	3.0	36	89	4	146	33	35	3	27	1.75
570351--570419	33	2.1	33	83	5	86	30	34	1	33	1.67
570756--570801	17	2.6	19	78	21	55	76	13	10	0	1.03
574685--574797	36	3.2	36	89	1	156	31	35	4	28	1.77
574718--574784	13	5.6	11	74	22	64	32	34	2	29	1.73
574768--574836	33	2.1	33	83	5	86	30	34	1	33	1.67
584840--584882	20	2.2	20	87	4	61	34	9	6	48	1.62
585877--585922	23	2.0	23	83	8	58	36	6	8	47	1.60
588417--588468	21	2.6	21	87	6	72	30	13	9	46	1.75
592297--592348	21	2.6	20	90	6	79	30	13	7	48	1.71
594266--594312	13	3.2	16	80	17	57	17	19	0	63	1.30
594287--594315	13	2.3	13	94	5	51	13	17	0	68	1.20
597437--597494	13	4.7	13	70	12	50	27	41	1	29	1.66
597430--597541	35	3.2	35	87	1	143	29	34	4	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599763--599793	2	15.5	2	100	0	62	48	0	0	51	1.00
604335--604386	19	2.6	21	90	6	81	46	5	13	34	1.67
607258--607361	33	3.1	33	82	9	95	30	36	1	30	1.69
611723--611826	33	3.1	33	82	9	95	30	36	1	30	1.69
616202--616305	33	3.1	33	82	9	95	30	36	1	30	1.69
619158--619205	19	2.5	19	90	10	71	45	6	12	35	1.67
640610--640649	9	4.3	9	96	3	71	87	0	12	0	0.54
643727--643784	24	2.4	24	100	0	116	32	34	12	20	1.90
645684--645716	12	2.8	12	90	9	50	84	0	15	0	0.61
653629--653661	17	1.9	17	93	0	57	30	27	0	42	1.56
654678--654737	30	2.0	31	83	3	77	26	8	10	55	1.61
655646--655697	21	2.6	21	90	6	81	34	13	5	46	1.67
659404--659436	17	1.9	17	93	0	57	30	27	0	42	1.56
660919--660970	19	2.6	21	90	6	81	46	5	13	34	1.67
661879--661938	30	2.0	31	83	3	77	55	10	8	26	1.61
668727--668759	17	1.9	17	93	0	57	30	27	0	42	1.56
670668--670700	17	1.9	17	93	0	57	30	27	0	42	1.56
676371--676431	14	4.0	16	85	10	76	18	16	6	59	1.58
676390--676431	17	2.6	17	92	7	70	16	19	4	59	1.54
683046--683388	171	2.0	169	92	3	573	32	18	18	30	1.95
684070--684102	17	1.9	17	93	0	57	30	27	0	42	1.56
690821--690862	16	2.6	16	88	3	57	19	11	4	64	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703031--703059	13	2.1	14	93	6	51	24	41	3	31	1.71
703038--703113	35	2.2	35	90	0	116	28	36	1	32	1.66
711692--711747	13	4.4	12	81	18	69	3	16	1	78	0.97
711703--711753	18	2.9	17	77	16	52	3	15	1	78	0.99
711678--711753	26	3.0	25	75	12	73	5	17	2	75	1.11
714156--714266	35	3.2	33	84	6	132	26	37	1	34	1.67
717099--717242	50	2.9	50	90	2	227	20	18	25	36	1.95
721392--721447	20	2.8	20	97	0	103	42	5	14	37	1.68
723386--723436	24	2.1	24	85	0	66	33	17	11	37	1.86
724602--724660	24	2.4	23	76	15	57	8	18	10	62	1.51
728632--728703	24	3.0	24	95	0	126	43	13	11	31	1.80
729914--729972	30	2.0	30	86	6	84	33	18	8	38	1.81
735896--736016	23	5.1	23	71	24	83	31	36	4	28	1.76
735893--736033	36	3.9	36	97	0	257	30	36	4	28	1.78
735896--736016	11	10.2	11	71	23	86	31	36	4	28	1.76
736415--736449	17	2.0	18	94	5	63	80	0	20	0	0.72
739968--740073	34	3.0	36	93	5	189	30	34	5	29	1.80
740044--740093	22	2.2	23	89	3	75	34	36	4	26	1.75
748450--748504	22	2.5	22	93	0	92	40	16	20	23	1.91
754869--754913	12	3.9	11	82	8	54	8	6	0	84	0.78
763330--763380	19	2.6	20	93	3	86	47	7	11	33	1.69
768269--768325	5	11.6	5	74	20	50	77	1	19	1	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768268--768325	25	2.4	24	83	11	82	77	1	18	1	0.94
768267--768320	13	4.3	13	76	23	62	77	1	18	1	0.95
768276--768318	8	5.2	8	78	15	52	74	2	20	2	1.04
770521--770561	21	1.9	22	85	5	57	34	21	17	26	1.95
772380--772453	26	3.0	26	71	20	68	17	16	0	66	1.26
782821--782854	17	2.0	17	100	0	68	35	11	29	23	1.90
789437--789487	24	2.1	24	85	0	66	33	17	11	37	1.86
792913--792937	13	1.9	13	100	0	50	0	16	0	84	0.63
792925--792979	24	2.3	24	90	0	92	7	14	18	60	1.57
793619--793669	19	2.6	19	84	3	57	47	5	11	35	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14