genome.fa.s7819.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007819.1 Hibiscus syriacus cultivar Beakdansim tig00110156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3855360

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  17  of  17  ( 2007 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3645046--3645097	21	2.4	23	81	12	65	55	0	0	44	0.99
3645086--3645129	20	2.1	21	83	4	54	31	11	2	54	1.48
3645261--3645306	20	2.4	19	82	7	56	63	4	4	28	1.33
3648561--3648605	19	2.4	19	92	0	72	33	2	15	48	1.57
3654679--3654722	20	2.1	21	83	4	54	31	11	2	54	1.48
3654855--3654900	20	2.4	19	82	7	56	63	4	4	28	1.33
3656344--3656401	29	2.0	29	89	0	89	41	5	17	36	1.72
3658212--3658256	19	2.4	19	92	0	72	33	2	15	48	1.57
3665011--3665055	19	2.4	19	92	0	72	33	2	15	48	1.57
3671794--3671844	20	2.6	20	87	3	68	43	0	1	54	1.11
3675571--3675877	152	2.0	153	96	3	566	26	8	16	47	1.76
3684788--3684849	28	2.3	26	86	8	88	19	30	16	33	1.94
3685823--3686009	97	1.9	96	90	3	295	37	14	4	42	1.67
3686742--3686807	32	2.0	33	97	2	125	33	21	9	36	1.85
3687297--3687387	29	3.1	29	95	0	155	15	35	27	21	1.94
3687451--3687482	14	2.3	14	100	0	64	6	34	37	21	1.79
3689163--3689268	43	2.5	43	77	0	113	27	15	19	37	1.92
3689275--3689552	44	6.4	44	80	5	271	29	15	25	28	1.96
3694326--3694662	83	4.1	83	78	7	278	32	21	14	31	1.94
3694326--3694662	165	2.0	164	80	7	371	32	21	14	31	1.94
3694408--3694606	41	4.8	40	67	19	115	33	21	15	30	1.94
3700268--3700295	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3701157--3701231	39	1.9	37	84	7	96	48	4	14	33	1.63
3701974--3702011	2	19.0	2	100	0	76	50	0	0	50	1.00
3712490--3712518	14	2.1	14	100	0	58	41	13	17	27	1.87
3712715--3712759	20	2.2	20	88	0	63	35	15	20	28	1.93
3712800--3712860	20	3.0	20	82	0	86	42	16	13	27	1.85
3712853--3712900	19	2.5	20	89	3	71	27	25	16	31	1.97
3712916--3712976	20	3.0	20	90	0	95	40	16	14	27	1.88
3712768--3712997	116	2.0	117	94	0	408	36	19	13	30	1.90
3712820--3713031	97	2.2	96	85	2	273	37	18	15	28	1.91
3712957--3713093	57	2.4	57	88	0	193	37	21	14	26	1.92
3718325--3718428	29	3.5	29	76	6	91	38	7	10	43	1.68
3734016--3734055	20	2.0	20	95	0	71	55	10	22	12	1.67
3737096--3737150	27	2.0	27	93	6	94	43	16	5	34	1.71
3737169--3737232	26	2.3	28	84	10	87	42	9	10	37	1.73
3737312--3737386	31	2.4	31	88	4	107	38	12	12	37	1.79
3738585--3738668	4	21.0	4	87	0	114	27	4	22	45	1.72
3749457--3749519	10	6.5	10	77	14	69	19	25	28	26	1.98
3749457--3749511	19	2.8	19	91	2	83	18	23	29	29	1.98
3749457--3749519	19	3.3	18	86	10	81	19	25	28	26	1.98
3750429--3750503	30	2.5	30	77	2	78	14	26	30	28	1.95
3755981--3756053	10	7.7	9	79	11	83	16	24	30	28	1.96
3755980--3756061	19	4.3	19	90	7	121	18	25	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3757021--3757144	63	2.0	63	80	6	144	16	28	28	26	1.97
3757844--3757921	36	2.2	36	100	0	156	23	0	43	33	1.54
3764296--3764360	32	2.1	30	83	11	78	23	9	4	63	1.43
3764401--3764458	10	5.6	10	76	15	55	68	5	3	22	1.24
3764399--3764458	22	2.9	21	76	14	61	68	5	3	23	1.24
3778885--3778927	22	2.0	22	85	0	59	60	4	0	34	1.17
3783868--3783947	33	2.4	34	83	10	110	30	0	26	43	1.55
3784038--3784088	2	25.5	2	100	0	102	49	0	0	50	1.00
3787672--3787727	26	2.1	27	83	6	69	51	0	1	46	1.11
3788151--3788206	26	2.1	28	83	12	73	50	1	0	48	1.11
3788162--3788218	26	2.2	26	78	9	64	56	0	0	43	0.99
3789328--3789376	19	2.5	19	87	9	64	34	0	6	59	1.22
3793786--3793952	6	27.3	6	80	6	75	1	46	0	52	1.08
3793785--3793940	9	17.0	9	75	6	62	1	47	0	51	1.09
3793785--3793850	18	3.8	18	86	11	102	3	57	0	39	1.14
3793785--3793847	3	21.0	3	83	0	81	3	58	0	38	1.14
3793846--3793953	3	36.0	3	84	3	101	0	38	0	61	0.96
3793785--3793935	33	4.5	33	80	3	131	1	47	0	50	1.09
3793837--3793949	36	3.1	36	81	12	147	0	41	0	58	0.98
3793823--3793951	42	3.0	42	81	4	161	0	42	0	56	1.04
3793825--3793952	9	14.2	9	73	5	80	0	42	0	57	1.04
3802865--3802894	3	9.7	3	92	7	51	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3803579--3803645	31	2.2	31	89	2	100	47	10	14	26	1.77
3808383--3808412	10	3.0	10	90	0	51	3	10	26	60	1.45
3808420--3808477	24	2.4	24	85	0	80	58	20	12	8	1.59
3808423--3808486	14	4.9	14	69	21	57	59	20	12	7	1.58
3809037--3809137	51	2.0	50	84	7	132	38	10	5	44	1.64
3816872--3816946	29	2.5	29	82	8	89	30	20	8	41	1.81
3819389--3819979	293	2.0	293	90	3	922	37	9	9	42	1.71
3821209--3821283	21	3.6	21	75	0	69	26	10	33	29	1.90
3822326--3822384	23	2.6	23	88	0	91	27	27	27	18	1.98
3823536--3823578	2	21.5	2	100	0	86	51	0	0	48	1.00
3824084--3824126	21	2.0	21	86	0	59	16	25	27	30	1.97
3827473--3827531	23	2.6	23	91	0	100	25	27	28	18	1.98
3832539--3832599	23	2.7	23	86	0	95	26	24	27	21	1.99
3834270--3834312	21	2.0	21	90	0	68	16	23	27	32	1.96
3835428--3835466	20	1.9	21	89	5	62	53	10	0	35	1.35
3837193--3837243	22	2.4	22	86	3	77	13	27	21	37	1.91
3837176--3837243	21	3.2	21	83	10	77	14	26	20	38	1.91
3847669--3848018	183	1.9	183	98	0	682	30	12	11	45	1.77
3849048--3849152	35	3.0	35	90	0	165	31	17	15	36	1.91
3850918--3850942	8	3.1	8	100	0	50	40	0	0	60	0.97
3854131--3854208	22	3.5	22	96	0	147	44	16	19	19	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17

The End!