genome.fa.s7819.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007819.1 Hibiscus syriacus cultivar Beakdansim tig00110156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3855360

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  2  of  17  ( 2007 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206608--206786	42	4.3	42	91	0	295	23	18	21	36	1.95
207652--207798	42	3.5	42	97	0	276	36	24	19	19	1.95
207677--207832	63	2.5	60	79	13	156	35	24	19	20	1.96
207655--207832	42	4.2	41	90	2	223	35	23	19	20	1.95
207655--207832	84	2.1	83	90	4	277	35	23	19	20	1.95
207729--207848	63	1.9	61	91	3	195	35	23	20	21	1.96
207790--207869	44	1.9	40	85	10	106	37	18	20	23	1.94
207740--207875	63	2.2	63	85	2	177	36	21	19	22	1.95
209255--209302	3	16.0	3	100	0	96	66	0	0	33	0.92
213416--213455	21	1.9	21	89	0	62	55	10	17	17	1.69
213417--213463	21	2.2	21	84	0	58	55	10	17	17	1.69
217492--217542	3	17.0	3	100	0	102	66	0	0	33	0.92
218067--218120	23	2.3	23	78	9	65	48	1	1	48	1.23
218365--218407	22	1.9	23	90	4	70	46	0	4	48	1.22
218363--218416	22	2.5	20	80	16	63	44	0	3	51	1.19
218497--218527	13	2.3	14	94	5	55	51	6	6	35	1.53
222710--222749	19	2.1	19	95	0	71	42	25	15	17	1.88
223899--223928	12	2.5	12	88	0	51	0	76	0	23	0.78
241217--241267	2	25.5	2	100	0	102	49	0	0	50	1.00
243237--243262	13	2.0	13	100	0	52	38	15	23	23	1.92
243606--243639	17	2.0	17	88	0	50	61	2	0	35	1.11
246163--246209	19	2.4	20	86	10	62	25	2	0	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250951--250980	11	2.6	12	89	10	53	83	0	16	0	0.65
252634--252779	78	1.9	78	94	0	256	29	13	24	32	1.93
253702--253917	54	4.0	54	91	0	324	37	12	21	27	1.90
255015--255361	37	9.4	36	68	6	192	31	17	13	36	1.90
255004--255246	36	6.6	37	71	6	165	31	17	13	37	1.88
255004--255372	73	5.0	73	83	5	427	33	17	13	35	1.89
255206--255379	79	2.3	76	82	7	210	36	17	13	32	1.89
255953--255981	2	14.5	2	100	0	58	48	0	0	51	1.00
256018--256118	9	11.1	9	71	20	52	23	1	0	73	1.00
256000--256244	4	60.8	4	67	17	71	21	5	1	71	1.12
255969--256151	46	4.2	44	81	12	173	24	2	1	71	1.06
255965--256151	44	4.2	45	80	14	174	25	2	1	71	1.06
256035--256157	13	10.2	12	71	17	78	19	3	0	76	0.97
256030--256159	20	6.3	20	70	18	90	19	3	0	76	0.96
256087--256162	39	2.0	38	84	7	100	14	5	1	78	0.98
259346--259387	12	3.4	12	81	18	59	80	2	14	2	0.90
259346--259386	11	3.5	11	84	15	55	80	2	14	2	0.92
259470--259607	69	2.0	69	91	2	224	36	22	15	25	1.93
260545--260636	32	2.8	32	86	1	130	30	10	20	38	1.87
261233--261555	106	3.0	106	90	0	484	33	24	19	21	1.97
261983--262052	34	2.1	32	89	5	104	24	31	12	31	1.93
262380--262460	20	4.0	20	79	9	101	19	29	34	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262381--262463	41	2.0	41	88	2	121	19	28	36	15	1.93
265845--265903	20	3.0	20	97	0	109	13	30	33	22	1.92
266439--266525	37	2.4	37	82	1	95	27	19	14	37	1.91
266241--266506	87	3.1	87	88	0	388	33	16	12	37	1.86
266473--266627	37	4.4	37	66	19	107	30	19	12	37	1.88
266410--266654	102	2.4	102	89	0	364	32	19	12	35	1.90
266692--266792	36	2.8	37	89	3	168	28	21	12	36	1.91
266705--266891	102	1.8	102	87	4	279	28	20	11	39	1.87
266692--266925	36	6.6	36	72	15	157	27	20	12	40	1.88
266911--267004	39	2.6	37	85	11	131	41	22	8	27	1.83
267008--267165	84	1.9	85	85	1	219	31	24	18	25	1.98
267999--268042	19	2.3	19	100	0	88	25	4	0	70	1.06
268007--268043	10	3.8	10	85	7	58	27	5	0	67	1.12
268173--268197	2	12.5	2	100	0	50	48	0	0	52	1.00
268183--268304	39	3.1	38	79	12	122	32	2	0	63	1.13
268238--268371	53	2.5	54	78	7	139	23	2	0	72	1.03
268805--269094	123	2.4	123	94	0	499	39	16	19	24	1.91
270465--270501	19	1.9	19	88	0	56	35	29	13	21	1.92
270527--270991	20	22.6	20	72	14	169	33	24	18	23	1.96
270651--271013	41	8.9	41	97	0	654	35	25	17	22	1.95
271028--271068	19	2.0	20	86	9	57	24	21	21	31	1.98
271438--271528	19	4.4	20	76	17	105	32	27	4	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271438--271530	44	2.2	41	82	12	118	34	26	4	34	1.76
272194--272238	19	2.3	20	85	11	58	26	2	0	71	0.98
273400--273441	21	2.0	21	100	0	84	28	33	14	23	1.94
275201--275263	2	31.5	2	100	0	126	50	0	0	49	1.00
295806--295998	20	9.6	20	83	7	78	34	26	19	19	1.95
295806--295997	40	4.8	40	85	3	154	34	27	19	19	1.96
295806--295998	60	3.2	60	83	4	246	34	26	19	19	1.95
296377--296447	33	2.2	33	94	0	124	11	23	16	47	1.79
296527--296619	21	4.6	20	80	9	116	46	18	21	13	1.84
296527--296622	42	2.3	40	87	5	138	46	17	21	13	1.82
296527--296619	19	4.6	19	77	10	96	46	18	21	13	1.84
296672--296736	21	3.1	21	82	4	96	10	26	15	47	1.78
296671--296734	20	3.2	20	82	4	92	12	25	15	46	1.81
297910--297945	14	2.6	14	95	0	63	33	0	22	44	1.53
298036--298123	19	4.8	19	82	14	123	47	15	22	13	1.81
298036--298142	53	2.0	53	98	1	207	45	16	24	13	1.83
298132--298374	19	13.7	19	76	18	265	14	22	17	45	1.85
298138--298374	53	4.5	53	95	1	422	14	22	17	45	1.84
298138--298374	105	2.2	106	95	0	422	14	22	17	45	1.84
298209--298388	86	2.1	84	84	12	224	13	22	17	46	1.84
298138--298388	33	7.2	33	70	17	177	13	22	17	45	1.84
300673--300697	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300872--300918	24	2.0	24	87	8	69	38	21	14	25	1.92
301471--301520	22	2.4	21	76	6	57	24	14	40	22	1.90
301611--301859	20	12.4	20	88	1	250	19	17	25	37	1.93
301853--301923	21	3.4	20	75	13	54	25	18	22	33	1.96
307752--307821	29	2.4	29	90	0	104	20	30	27	22	1.98
310825--310861	14	2.6	15	87	8	51	40	0	0	59	0.97
327299--327329	16	1.9	16	100	0	62	58	22	12	6	1.58
328492--328537	24	1.9	24	95	0	83	54	26	10	8	1.64
329161--329535	187	2.0	187	98	0	723	41	14	22	21	1.89
340851--340883	10	3.3	10	95	0	57	30	0	12	57	1.35
341347--341460	60	1.9	60	85	3	158	28	15	18	36	1.92
341992--342039	20	2.5	19	86	6	69	66	0	29	4	1.10
341991--342042	11	4.8	11	81	11	63	65	0	30	3	1.10
342307--342388	42	2.0	42	90	0	128	21	12	15	50	1.77
342308--342398	42	2.2	42	86	7	123	20	10	17	50	1.76
342595--342657	23	2.6	24	78	19	60	50	1	0	47	1.10
342629--342672	22	2.0	23	81	4	54	43	4	0	52	1.22
342972--343012	14	2.8	15	77	7	57	31	17	7	43	1.76
343448--343513	16	3.8	16	80	20	78	39	0	9	51	1.34
343447--343513	17	3.8	17	81	16	82	38	0	8	52	1.33
343719--343749	16	1.9	16	93	0	53	38	16	3	41	1.64
346932--346973	11	3.8	11	84	12	59	28	2	0	69	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346931--346973	16	2.6	17	75	20	54	30	2	0	67	1.03
346979--347016	20	1.9	20	88	0	58	42	7	5	44	1.56
347113--347153	16	2.5	16	84	4	55	41	2	12	43	1.55
347113--347148	16	2.2	17	90	5	56	44	0	11	44	1.39
347072--347287	59	3.5	60	73	14	183	43	2	8	44	1.47
347200--347277	11	6.7	11	69	21	52	44	1	10	43	1.46
347532--347560	15	1.9	15	100	0	58	34	0	10	55	1.34
347537--347645	21	4.3	27	70	20	92	37	1	13	46	1.54
347554--347585	16	2.0	16	93	0	55	40	0	18	40	1.51
349936--350048	57	2.0	57	81	10	133	50	14	0	34	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17