genome.fa.s7819.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007819.1 Hibiscus syriacus cultivar Beakdansim tig00110156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3855360

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  3  of  17  ( 2007 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350332--350367	15	2.4	15	95	0	63	0	36	0	63	0.94
357751--358118	183	2.0	184	99	0	729	35	15	17	31	1.91
362815--362839	3	8.3	3	100	0	50	0	36	0	64	0.94
369994--370107	59	2.1	51	71	22	113	45	20	10	23	1.82
376106--376164	29	2.0	29	100	0	118	52	13	10	23	1.71
380299--380395	40	2.4	40	76	8	99	31	15	21	30	1.94
384415--384455	11	3.6	11	81	18	57	80	2	0	17	0.82
384415--384451	18	2.1	18	94	0	65	81	2	0	16	0.81
384535--384622	31	2.7	31	82	16	108	38	6	7	46	1.60
384535--384627	36	2.8	34	80	11	95	38	6	7	47	1.58
384612--384878	5	53.6	5	96	0	428	40	4	0	55	1.19
392821--393212	195	2.0	197	98	1	770	44	11	7	36	1.69
400171--400321	77	2.0	77	80	7	173	37	9	15	37	1.81
400717--400928	72	2.9	74	82	3	259	41	8	14	34	1.76
401165--401480	100	3.2	99	83	4	366	34	16	11	37	1.84
401612--401793	73	2.6	72	84	6	219	34	9	7	47	1.65
401932--402083	77	2.0	77	88	2	225	35	17	9	37	1.83
402192--402392	77	2.6	77	91	0	312	36	18	8	35	1.83
402340--402431	39	2.3	40	94	1	159	39	20	3	36	1.69
403132--403186	15	3.7	15	75	15	60	54	0	7	38	1.28
407560--407619	26	2.3	26	91	0	93	25	11	6	56	1.59
408239--408428	45	4.2	45	82	9	217	36	8	13	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408244--408428	90	2.1	90	84	6	241	36	8	14	40	1.76
410096--410148	26	2.1	26	85	3	72	16	13	0	69	1.18
412280--412415	69	2.0	69	94	0	236	24	6	15	53	1.65
412475--412533	24	2.5	24	81	10	68	40	0	6	52	1.28
412578--412635	2	30.5	2	89	10	95	50	0	0	50	1.00
412844--413053	80	2.6	79	85	8	264	31	9	9	50	1.65
414771--414891	30	4.0	30	93	0	188	28	24	10	36	1.89
415621--415926	58	5.3	58	84	4	377	37	9	13	39	1.77
415621--415936	115	2.7	114	82	5	359	38	8	13	38	1.76
415604--415941	173	1.9	174	84	5	452	37	9	13	39	1.77
416332--416369	18	2.1	18	95	0	67	13	31	5	50	1.63
419995--420032	19	2.0	20	89	5	60	50	2	21	26	1.62
424090--424143	20	2.7	20	79	0	63	27	24	22	25	2.00
424543--424613	3	23.0	3	82	5	88	38	1	0	60	1.06
424629--424669	17	2.4	17	87	0	55	29	41	12	17	1.85
426228--426275	22	2.0	25	84	11	66	47	2	0	50	1.12
426770--426809	17	2.2	19	86	8	57	27	2	2	67	1.16
430100--430131	15	2.1	15	94	0	55	25	18	9	46	1.79
436394--436583	93	2.0	93	94	2	337	28	15	20	35	1.93
436487--436697	115	1.8	114	94	1	377	30	16	20	32	1.95
436602--436790	92	2.0	93	89	3	292	28	15	21	34	1.94
436374--436862	207	2.4	208	95	1	883	30	15	21	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437590--438266	113	5.9	113	84	5	717	38	13	18	28	1.89
437968--438012	24	1.9	23	82	13	56	48	6	26	17	1.72
437582--438142	225	2.5	225	86	3	740	37	13	19	30	1.89
438052--438285	124	1.9	124	90	0	371	42	15	17	24	1.88
438052--438332	124	2.3	123	85	3	352	42	16	18	23	1.89
438492--438541	3	16.0	3	79	8	55	38	2	0	60	1.09
438557--438596	17	2.4	17	86	0	53	30	42	12	15	1.83
439960--440002	13	3.2	13	81	15	52	32	4	0	62	1.15
439965--440002	13	2.7	15	80	19	55	31	5	0	63	1.17
445695--445748	20	2.7	20	79	0	63	27	24	22	25	2.00
448390--448537	45	3.3	45	85	8	198	24	37	20	17	1.94
449150--449192	2	21.5	2	100	0	86	51	0	0	48	1.00
449480--449508	2	14.5	2	100	0	58	51	0	0	48	1.00
452474--452556	29	2.8	29	90	1	130	42	10	14	32	1.80
455924--455953	15	2.0	15	93	0	51	13	0	30	56	1.37
457241--457321	29	2.8	29	84	1	108	41	9	13	34	1.78
474670--474750	26	3.1	26	76	3	83	40	16	14	28	1.88
474694--474737	13	3.4	13	80	0	52	40	11	13	34	1.81
477160--477195	6	6.0	6	90	0	54	47	16	16	19	1.83
478060--478085	13	2.0	13	100	0	52	23	23	23	30	1.99
478035--478219	85	2.2	85	79	3	185	30	20	20	28	1.98
481017--481062	22	2.0	23	95	4	85	17	17	19	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481733--482103	186	2.0	185	99	0	733	26	21	27	25	1.99
490997--491040	2	22.5	2	95	4	81	52	47	0	0	1.00
491040--491069	2	15.0	2	100	0	60	50	0	0	50	1.00
498286--498339	26	2.0	27	85	3	74	55	1	1	40	1.21
499383--499420	20	1.9	20	88	0	58	31	21	5	42	1.75
501181--501248	29	2.3	30	85	9	88	67	0	1	30	0.99
502997--503049	27	2.0	27	92	3	90	30	7	15	47	1.73
505216--505243	12	2.3	12	100	0	56	17	25	39	17	1.92
505245--505315	19	3.7	19	87	7	99	28	32	23	15	1.95
505239--505315	10	8.1	9	76	11	73	27	31	25	15	1.96
512383--512470	10	9.1	9	72	14	68	29	28	26	15	1.96
512389--512442	19	2.8	19	88	8	74	27	31	24	16	1.96
515405--515525	5	23.8	5	70	14	61	72	4	3	19	1.17
515459--515510	21	2.4	22	90	3	88	78	7	1	11	1.02
515457--515526	27	2.6	27	76	10	81	77	7	2	12	1.09
515410--515528	16	7.4	16	66	15	57	72	5	3	19	1.18
515458--515528	11	6.6	11	70	6	56	77	7	2	12	1.08
521347--521501	83	1.9	84	83	6	208	52	12	3	31	1.54
522117--522147	12	2.6	12	94	0	53	41	6	51	0	1.27
529939--529984	20	2.3	20	96	0	83	39	21	8	30	1.84
530063--530174	59	1.9	59	85	3	154	33	16	11	37	1.85
530122--530372	117	2.1	117	86	4	344	32	20	10	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530165--530368	58	3.5	60	75	9	206	30	21	11	37	1.88
530106--530372	118	2.3	118	84	4	351	31	19	11	37	1.87
536537--536576	21	1.9	21	100	0	80	25	27	22	25	2.00
536905--536943	17	2.2	18	86	4	53	38	15	10	35	1.81
537103--537245	59	2.4	59	83	2	162	36	20	8	34	1.83
537131--537258	59	2.2	59	85	2	159	39	18	7	35	1.78
537203--537358	58	2.7	57	77	7	152	32	22	8	37	1.84
540090--540445	184	1.9	184	91	3	583	46	9	3	41	1.52
541720--541771	24	2.1	24	82	7	68	40	5	1	51	1.37
544197--544353	85	1.8	85	85	5	219	53	12	3	31	1.53
544998--545028	12	2.6	12	94	0	53	41	6	51	0	1.27
552936--552988	2	26.5	2	96	0	97	52	0	0	47	1.00
553008--553172	85	2.0	84	90	1	258	32	17	20	30	1.95
553154--553198	13	3.5	13	84	0	63	40	17	15	26	1.90
554045--554147	21	4.9	21	74	2	73	24	14	20	40	1.90
563874--563941	21	3.2	21	78	0	82	22	14	20	42	1.88
570684--570904	64	3.5	64	84	2	266	33	19	19	27	1.96
571382--571414	15	2.2	15	94	0	57	18	18	30	33	1.94
577598--577781	64	2.9	63	83	3	226	35	19	18	26	1.95
578050--578131	12	6.9	12	87	6	114	40	1	25	32	1.64
578253--578284	14	2.2	15	94	5	57	15	18	34	31	1.93
585935--586308	187	2.0	187	97	2	716	36	21	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587026--587094	31	2.2	31	84	0	84	31	15	17	34	1.92
588327--588372	14	3.6	13	75	24	53	60	17	4	17	1.51
588322--588372	24	2.1	24	89	7	77	62	15	3	17	1.47
588507--588533	12	2.2	12	100	0	54	14	33	25	25	1.95
591496--591522	14	1.9	14	100	0	54	66	0	0	33	0.92
591516--591566	24	2.1	24	82	7	59	60	15	3	19	1.50
604142--604460	160	2.0	163	97	2	608	35	9	12	42	1.76
604619--604654	13	2.8	13	91	0	54	33	11	22	33	1.89
620063--620126	31	2.1	31	87	0	92	34	14	35	15	1.88
620283--620652	184	2.0	185	99	0	733	45	14	13	25	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17