genome.fa.s7819.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007819.1 Hibiscus syriacus cultivar Beakdansim tig00110156_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3855360

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   

This is table  4  of  17  ( 2007 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629216--629249	16	2.2	15	94	5	59	47	23	5	23	1.73
631885--631975	30	3.0	30	82	3	103	25	14	38	21	1.91
631920--631987	30	2.3	30	94	0	118	23	16	39	20	1.91
634893--634926	16	2.2	15	94	5	59	47	23	5	23	1.73
640505--640536	15	2.1	16	94	5	57	12	37	28	21	1.90
643477--643525	2	24.5	2	100	0	98	48	0	0	51	1.00
652261--652334	32	2.3	33	76	9	89	56	1	12	29	1.44
652515--652600	9	9.6	9	98	0	154	31	0	13	54	1.40
653200--653257	22	2.6	22	77	0	71	18	37	18	24	1.94
655136--655205	19	3.6	20	76	17	67	32	11	20	35	1.88
655154--655202	20	2.5	19	90	3	71	30	12	22	34	1.91
655128--655202	39	1.9	38	86	7	107	36	13	17	33	1.88
655193--655359	20	8.4	20	76	5	176	19	12	24	43	1.85
655193--655385	100	1.9	100	91	0	314	20	13	24	41	1.88
655296--655386	40	2.3	40	81	7	105	23	13	25	38	1.91
655474--655512	20	2.0	20	100	0	78	51	10	12	25	1.71
656095--656154	29	2.1	29	87	0	84	33	13	16	36	1.88
661237--661263	14	1.9	14	100	0	54	44	0	0	55	0.99
661271--661323	25	2.1	25	82	6	63	47	1	3	47	1.31
665698--665723	12	2.2	12	100	0	52	7	11	30	50	1.67
669881--669920	18	2.2	18	95	0	71	47	10	37	5	1.59
670887--670945	28	2.1	29	81	15	70	50	6	8	33	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673562--673669	50	2.1	52	80	16	118	71	3	9	15	1.26
673759--673807	16	2.9	16	88	11	64	79	0	2	18	0.83
673723--673797	27	2.7	27	75	4	69	73	4	9	13	1.22
673805--673829	2	12.5	2	100	0	50	52	0	0	48	1.00
675012--675087	3	22.7	3	79	15	62	68	1	1	28	1.06
675012--675087	10	7.2	10	80	16	91	68	1	1	28	1.06
675018--675087	13	5.2	13	80	13	88	68	1	1	28	1.06
675154--675244	33	2.7	33	86	5	130	45	6	3	45	1.46
675221--675486	38	7.2	37	83	7	276	43	6	4	44	1.52
675273--675505	39	6.3	37	79	12	133	42	7	5	45	1.54
676093--676939	84	10.2	84	78	5	822	25	19	24	30	1.98
676092--676939	165	5.1	166	82	4	1010	25	19	24	30	1.98
676153--676939	249	3.1	247	84	3	984	25	19	24	30	1.98
676092--676939	333	2.5	333	84	3	1066	25	19	24	30	1.98
682168--682223	25	2.2	25	84	12	71	78	5	5	10	1.07
682214--682305	46	1.9	48	81	14	111	70	3	8	17	1.26
682397--682472	11	6.9	11	77	5	82	84	6	1	7	0.84
682406--682470	17	3.8	17	78	8	78	84	7	1	6	0.83
682390--682472	34	2.4	33	88	7	114	83	6	1	9	0.87
682397--682470	27	2.9	25	80	9	87	85	6	1	6	0.81
682470--682500	2	15.5	2	93	0	53	51	3	0	45	1.17
686994--687019	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689075--689299	29	7.7	28	74	13	161	52	9	8	30	1.62
689075--689259	57	3.2	57	80	8	203	51	9	9	29	1.66
689087--689316	90	2.6	87	77	9	211	52	9	7	30	1.62
692192--692216	13	1.9	13	100	0	50	32	8	4	56	1.47
692927--692998	23	2.9	25	80	14	87	44	4	0	51	1.20
692938--692998	23	2.5	24	86	5	88	44	4	0	50	1.23
692927--693012	25	3.3	27	80	16	94	44	3	0	52	1.18
692915--693013	25	3.8	26	73	17	89	42	6	0	51	1.26
692950--693045	28	3.5	29	79	14	98	40	3	0	56	1.15
694807--694842	19	1.9	18	94	5	63	83	0	2	13	0.76
698547--698596	20	2.5	20	100	0	100	32	20	22	26	1.98
707615--707667	27	2.0	27	82	17	67	33	18	5	41	1.74
709931--709964	17	2.1	16	88	5	50	47	2	0	50	1.16
720063--720098	18	2.0	18	88	0	54	38	11	13	36	1.81
723415--723465	21	2.5	21	80	20	56	15	5	3	74	1.16
726484--726525	4	10.5	4	80	10	50	26	2	0	71	0.98
736523--736547	2	12.5	2	100	0	50	48	0	0	52	1.00
751434--751738	165	1.8	168	82	4	395	31	13	20	34	1.91
751470--751738	85	3.2	82	74	11	235	31	12	21	35	1.90
755434--755496	21	3.0	21	83	0	81	42	19	36	1	1.61
755812--756014	44	4.7	44	81	4	200	33	23	16	26	1.95
755948--756128	43	4.2	43	80	3	184	36	22	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755921--756128	87	2.4	87	80	5	217	36	24	14	24	1.93
756472--756512	7	5.6	7	91	5	55	56	0	2	41	1.13
756482--756512	8	4.0	8	91	8	55	61	0	0	38	0.96
757163--757211	3	16.0	3	95	4	89	65	0	34	0	0.93
759227--759266	21	1.9	21	94	0	71	17	10	7	65	1.46
762376--762402	13	2.1	13	100	0	54	40	0	0	59	0.98
762384--762444	29	2.0	29	81	9	68	50	0	1	47	1.10
763725--763789	3	22.0	3	96	3	123	33	0	0	66	0.92
765963--766037	28	2.7	27	71	16	73	22	21	18	37	1.94
766751--766800	19	2.6	19	87	0	73	40	2	0	58	1.10
767524--767548	11	2.3	11	100	0	50	60	0	0	40	0.97
768455--768488	2	17.0	2	93	0	59	47	0	2	50	1.16
771397--771432	18	1.9	19	88	5	56	50	0	13	36	1.43
774708--774814	52	2.1	52	85	3	144	37	12	7	42	1.70
775271--775315	23	2.0	23	91	8	74	37	15	2	44	1.59
779732--779808	36	2.1	37	83	9	95	49	1	3	45	1.28
791695--791761	22	3.0	22	95	2	116	25	28	26	19	1.99
793458--793502	21	2.1	21	87	0	63	15	24	28	31	1.96
796639--796705	22	3.0	22	95	2	116	25	28	26	19	1.99
798402--798446	21	2.1	21	84	8	56	17	22	28	31	1.97
799544--799642	42	2.3	42	91	1	162	49	19	5	26	1.68
799937--799976	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
812298--812331	14	2.4	14	95	0	59	23	35	35	5	1.79
812305--812335	14	2.2	14	94	0	53	22	38	29	9	1.86
812391--812467	29	2.7	29	97	0	145	23	27	35	14	1.93
813025--813095	33	2.2	33	86	0	97	46	4	11	38	1.59
813817--813881	28	2.3	29	81	7	89	69	1	0	29	0.98
813817--813887	19	3.7	19	70	22	51	67	1	0	30	0.99
813823--813866	22	2.0	21	83	12	54	68	2	0	29	1.02
814233--814319	2	43.5	2	100	0	174	50	0	0	49	1.00
817405--817455	16	3.2	16	85	0	66	54	15	1	27	1.52
817413--817466	4	13.5	4	84	0	63	46	20	5	27	1.73
817414--817466	16	3.3	16	83	0	70	45	20	5	28	1.74
824713--824757	22	2.1	22	87	4	65	24	28	26	20	1.99
825323--825405	23	3.6	23	73	18	82	28	27	26	16	1.97
832439--832509	24	3.0	24	71	20	69	29	23	28	18	1.98
837748--837799	20	2.6	20	79	8	61	28	7	28	34	1.85
849518--849555	5	7.6	5	96	0	67	39	2	57	0	1.12
850411--850457	4	11.8	4	100	0	94	51	0	23	25	1.49
850930--851009	43	1.9	42	84	5	108	43	7	18	30	1.78
851407--851450	18	2.4	19	84	7	63	50	2	11	36	1.51
859679--859707	14	2.0	15	93	6	51	48	20	3	27	1.66
860134--860182	20	2.3	21	89	6	73	48	0	10	40	1.37
878329--878374	2	24.0	2	79	16	53	43	2	2	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878575--878626	27	2.0	26	85	10	72	42	3	13	40	1.62
879062--879115	8	6.8	8	75	23	51	37	0	0	62	0.95
879045--879141	17	6.1	15	67	21	56	35	0	2	62	1.07
879062--879140	32	2.5	30	80	12	79	37	0	0	62	0.96
879103--879157	12	4.5	13	76	15	55	38	0	0	61	0.96
879078--879154	23	3.4	23	76	18	72	37	0	0	62	0.96
887719--887779	32	1.9	32	86	0	86	36	24	4	34	1.77
887718--887788	32	2.2	32	80	5	81	36	22	5	35	1.78
894405--894442	7	5.7	7	87	12	62	57	0	0	42	0.98
894406--894440	6	5.5	6	90	10	52	57	0	0	42	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17