genome.fa.s7859.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007859.1 Hibiscus syriacus cultivar Beakdansim tig00110221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3538007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  14  of  18  ( 2075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2896913--2896977	21	3.1	21	97	0	121	21	21	27	29	1.99
2897618--2897688	35	2.0	36	97	2	135	22	30	29	16	1.96
2906484--2906690	65	3.2	64	80	11	217	30	24	18	26	1.98
2909616--2909705	21	4.3	21	82	0	90	44	16	35	3	1.64
2910247--2910331	43	2.0	43	85	0	116	29	18	22	29	1.98
2912384--2912430	24	2.0	24	82	0	58	44	2	0	53	1.12
2913255--2913309	24	2.2	26	87	6	78	25	16	9	49	1.75
2916585--2916626	15	2.8	15	85	0	57	28	19	0	52	1.46
2916906--2917345	139	3.2	137	82	4	494	28	11	11	48	1.75
2916906--2917431	277	1.9	275	79	5	596	28	12	12	47	1.77
2921220--2921264	20	2.2	20	84	4	54	35	24	22	17	1.95
2921312--2921351	21	2.0	21	85	5	55	37	10	17	35	1.83
2923922--2924002	20	4.0	21	77	4	76	37	23	17	22	1.94
2926277--2926321	3	15.0	3	100	0	90	33	0	0	66	0.92
2927392--2927471	35	2.3	35	91	0	133	42	21	0	36	1.53
2929194--2929350	64	2.5	64	77	14	162	33	19	19	27	1.96
2929727--2929836	29	3.8	29	90	2	168	46	13	20	19	1.83
2929921--2929984	15	4.3	15	93	0	110	15	23	31	29	1.95
2936046--2936201	65	2.4	64	79	9	165	35	18	18	27	1.95
2936580--2936689	29	3.8	29	95	2	195	45	16	20	17	1.85
2936774--2936807	15	2.3	15	89	0	50	17	20	29	32	1.96
2937945--2938018	2	37.0	2	97	0	139	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2948163--2948213	21	2.4	21	90	0	75	47	19	15	17	1.83
2949120--2949144	7	3.6	7	100	0	50	28	12	0	60	1.32
2949264--2949293	13	2.2	14	94	5	53	40	0	0	60	0.97
2949276--2949322	17	2.8	17	80	3	60	38	4	0	57	1.18
2949613--2949647	18	1.9	18	88	0	52	31	0	11	57	1.34
2950696--2950724	14	2.0	15	93	6	51	31	0	0	68	0.89
2950684--2950730	17	2.9	17	75	21	55	31	0	2	65	1.04
2951280--2951335	23	2.3	26	76	17	66	58	7	1	32	1.35
2951283--2951333	24	2.2	23	86	6	68	56	7	1	33	1.39
2952828--2952877	19	2.7	19	78	9	50	68	0	2	30	1.01
2953237--2953704	125	3.8	124	79	2	411	25	20	20	33	1.97
2953589--2953699	40	2.8	41	74	10	104	23	22	20	33	1.97
2954082--2954323	50	4.8	50	76	6	204	40	17	17	24	1.91
2954111--2954323	100	2.1	100	82	3	250	41	16	18	23	1.90
2954310--2954397	45	2.0	45	95	0	158	37	20	19	22	1.94
2954311--2954409	45	2.2	45	90	0	153	37	20	19	23	1.94
2954428--2954599	37	4.6	37	87	1	220	45	15	16	23	1.85
2955688--2956019	175	1.9	175	83	2	434	31	21	11	35	1.89
2960351--2960405	26	2.2	25	83	9	67	58	3	3	34	1.33
2964502--2964562	3	21.0	3	77	12	65	27	3	1	67	1.16
2964495--2964557	29	2.2	30	88	8	103	25	4	3	66	1.26
2964508--2964573	28	2.3	28	82	7	71	27	4	1	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2965048--2965092	18	2.3	20	88	7	67	86	2	8	2	0.73
2966816--2966859	22	2.0	22	81	0	52	27	4	15	52	1.63
2971194--2971283	12	8.2	11	73	21	64	71	10	15	3	1.26
2971199--2971248	25	2.0	25	92	0	82	68	10	20	2	1.29
2971218--2971258	18	2.2	19	91	4	66	68	9	19	2	1.29
2971215--2971287	18	4.1	18	70	18	53	69	10	16	2	1.28
2972463--2972506	4	11.5	4	90	9	74	50	25	0	25	1.50
2973520--2973617	29	3.5	29	87	5	148	28	9	15	46	1.76
2973520--2973632	29	4.1	26	83	12	79	30	8	13	47	1.73
2973727--2973949	120	1.9	118	80	7	263	30	14	11	43	1.81
2973953--2974032	40	2.0	40	85	4	108	31	20	12	36	1.89
2974128--2974171	15	2.9	15	93	0	70	31	20	4	43	1.72
2974177--2974331	64	2.5	62	78	3	168	29	14	14	41	1.86
2974586--2974912	40	7.8	40	70	17	173	24	30	19	25	1.98
2974616--2974991	46	8.7	45	72	14	209	24	29	19	26	1.98
2974586--2974984	129	3.1	127	90	2	620	24	30	19	25	1.98
2975153--2975207	3	19.0	3	75	14	53	27	3	1	67	1.17
2975142--2975195	23	2.4	22	87	6	81	22	5	3	68	1.26
2975153--2975218	31	2.2	29	82	12	73	25	4	1	68	1.18
2975692--2975727	14	2.5	15	90	4	56	88	0	8	2	0.59
2975692--2975727	18	2.1	16	90	10	54	88	0	8	2	0.59
2977445--2977488	22	2.0	22	81	0	52	27	4	15	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2988060--2988222	46	3.7	46	70	20	168	57	1	6	35	1.32
2988023--2988210	84	2.2	84	95	0	333	55	1	6	36	1.34
2988778--2988812	17	2.0	17	88	5	52	60	0	0	40	0.97
2992732--2992757	2	13.0	2	100	0	52	50	0	0	50	1.00
2994744--2994800	25	2.2	25	87	9	80	24	3	1	70	1.13
2995263--2995303	14	2.9	14	89	7	57	31	0	0	68	0.90
3002840--3003286	81	5.5	81	85	1	538	25	19	20	33	1.96
3002840--3003286	243	1.8	244	86	2	648	25	19	20	33	1.96
3003260--3003309	18	2.7	19	87	3	59	36	16	18	30	1.92
3003270--3003309	18	2.2	18	95	0	71	42	17	12	27	1.85
3003385--3003484	42	2.4	41	76	1	101	30	23	23	24	1.99
3003512--3003695	71	2.5	73	84	7	239	23	17	17	40	1.90
3003512--3003695	37	5.1	37	88	5	250	23	17	17	40	1.90
3003715--3003891	41	4.3	42	74	11	150	31	22	20	26	1.98
3005981--3006178	109	1.8	107	84	2	270	32	18	14	34	1.91
3015710--3015840	50	2.6	50	90	0	199	23	31	23	21	1.98
3018597--3018636	22	1.9	21	85	10	55	70	0	0	30	0.88
3028636--3028670	2	17.5	2	100	0	70	48	0	0	51	1.00
3029059--3029470	221	1.9	222	90	1	657	33	12	15	38	1.86
3032926--3033027	51	2.0	50	84	1	132	40	4	7	47	1.54
3036964--3037032	35	1.9	37	91	5	115	40	15	15	27	1.88
3037733--3037766	16	2.1	16	88	0	50	32	5	0	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3043189--3043239	22	2.3	22	93	0	84	37	25	11	25	1.90
3044091--3044197	37	2.9	37	87	2	153	27	24	11	37	1.89
3044106--3044563	102	4.5	102	94	0	799	29	20	12	37	1.90
3044310--3044396	37	2.4	37	88	1	122	25	20	13	40	1.89
3044426--3044498	37	2.0	37	88	0	110	26	21	13	38	1.91
3044463--3044628	65	2.6	65	95	0	296	30	19	12	37	1.89
3044346--3044663	167	1.9	169	92	1	532	29	20	12	37	1.89
3044736--3044807	37	1.9	37	85	0	99	26	20	11	41	1.86
3045166--3045925	109	7.3	105	79	8	663	32	25	20	21	1.98
3046395--3046485	35	2.5	36	83	5	112	39	14	15	30	1.87
3047158--3047195	16	2.3	17	86	4	51	34	5	0	60	1.19
3052324--3052368	21	2.1	21	84	8	56	17	2	2	77	0.97
3052321--3052367	24	2.0	24	86	0	67	17	2	2	78	0.94
3052321--3052362	6	7.0	6	86	10	50	19	0	2	78	0.86
3053869--3053912	2	22.0	2	100	0	88	50	0	0	50	1.00
3056084--3056195	21	5.4	21	67	7	59	33	25	19	20	1.96
3056243--3056418	20	8.7	20	78	9	187	38	24	18	18	1.93
3056243--3056417	41	4.3	40	85	5	219	38	24	18	18	1.93
3056243--3056417	81	2.2	81	86	4	237	38	24	18	18	1.93
3056975--3057046	20	3.5	20	86	1	99	52	19	15	12	1.74
3057035--3057099	14	4.3	14	73	17	58	46	21	23	9	1.80
3057030--3057108	33	2.4	33	93	0	131	46	21	21	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3057114--3057237	19	6.7	19	79	12	141	12	21	19	46	1.82
3057122--3057237	33	3.1	39	80	12	129	12	22	19	45	1.83
3058915--3059483	94	6.1	94	94	1	955	21	12	18	47	1.82
3059989--3060055	21	3.2	21	66	6	55	23	35	20	19	1.95
3059937--3060055	42	2.8	42	81	5	107	22	35	18	23	1.96
3061537--3061587	14	3.1	17	72	21	54	45	17	23	13	1.84
3061537--3061630	33	2.8	33	88	3	136	45	21	20	12	1.84
3061600--3061645	19	2.4	19	92	0	74	45	23	15	15	1.84
3061641--3061778	19	7.7	19	76	16	143	13	22	19	44	1.85
3061689--3061818	20	7.3	19	73	17	91	16	23	19	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18