Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007859.1 Hibiscus syriacus cultivar Beakdansim tig00110221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3538007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2075 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3499491--3499534
21
2.1
21
87
8
63
9
15
11
63
1.51
3500000--3500039
20
2.0
20
90
4
64
55
7
0
37
1.29
3502406--3502487
23
3.7
23
80
4
71
18
28
31
21
1.97
3502406--3502476
23
3.2
22
80
7
72
18
26
35
19
1.95
3508872--3508927
19
2.9
19
89
0
85
35
21
19
23
1.96
3508975--3509027
21
2.5
21
87
0
79
20
24
20
33
1.97
3509017--3509092
20
3.8
20
98
0
143
36
15
21
26
1.93
3509076--3509193
20
6.4
20
75
18
103
27
26
20
26
1.99
3509091--3509148
30
1.9
30
89
0
89
25
25
18
29
1.98
3510009--3510062
24
2.2
24
90
0
81
22
18
18
40
1.91
3512327--3512361
18
1.9
18
94
0
61
54
25
2
17
1.57
3512315--3512354
12
3.3
12
89
0
53
55
20
5
20
1.62
3512313--3512348
12
3.0
12
91
0
63
50
22
8
19
1.74
3512455--3512628
20
9.1
20
80
8
182
32
22
20
25
1.98
3512622--3512660
20
2.0
20
94
0
69
7
20
25
46
1.77
3512779--3512833
29
1.9
28
85
3
74
47
18
0
34
1.49
3512774--3512835
14
4.3
14
79
6
70
46
16
0
37
1.47
3514831--3514897
20
3.5
18
86
11
89
35
26
19
17
1.94
3514842--3514897
20
2.8
20
94
0
94
35
25
19
19
1.95
3514940--3514987
20
2.4
20
92
0
78
18
20
27
33
1.96
3515136--3515185
18
2.8
18
100
0
100
42
6
20
32
1.76
3516132--3516187
20
2.8
20
88
0
76
50
25
16
8
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3516137--3516206
20
3.5
20
86
0
68
41
22
18
17
1.90
3516619--3516660
22
1.9
22
90
9
68
19
14
40
26
1.89
3516822--3516894
20
3.7
20
88
0
110
23
21
27
27
1.99
3516883--3516966
20
4.6
20
76
19
92
23
19
16
40
1.91
3516918--3516944
13
2.1
13
100
0
54
22
18
14
44
1.86
3516898--3516964
33
2.0
33
91
0
107
25
19
13
41
1.88
3516963--3517008
21
2.2
21
92
0
74
36
19
26
17
1.94
3520267--3520330
30
2.1
31
85
2
85
53
9
14
23
1.69
3521209--3521284
23
3.2
24
69
25
63
40
6
2
50
1.42
3521198--3521332
46
2.9
47
76
13
145
40
6
4
48
1.50
3523566--3523598
2
16.5
2
100
0
66
48
0
0
51
1.00
3536914--3536958
14
3.1
14
80
6
54
84
0
6
8
0.78
3536908--3536947
7
5.7
7
87
0
53
82
0
5
12
0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!