genome.fa.s7859.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007859.1 Hibiscus syriacus cultivar Beakdansim tig00110221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3538007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  8  of  18  ( 2075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1599669--1599813	77	1.9	77	84	5	195	24	17	17	40	1.90
1599577--1599910	167	2.0	167	82	3	404	24	17	18	40	1.91
1599622--1599869	122	2.0	123	81	6	290	24	16	18	40	1.91
1599487--1599957	257	1.8	257	84	0	638	24	16	18	39	1.92
1600490--1600537	15	3.3	15	75	16	55	35	4	2	58	1.29
1604619--1604661	12	3.7	12	84	9	54	58	0	0	41	0.98
1604873--1604914	20	2.1	20	95	0	75	35	16	21	26	1.94
1604972--1605605	105	6.0	105	96	0	1133	23	17	24	34	1.96
1606401--1606440	1	40.0	1	87	0	53	2	5	0	92	0.45
1606401--1606441	19	2.3	19	88	12	61	2	7	0	90	0.54
1615859--1615902	20	2.2	20	88	8	63	72	2	6	18	1.17
1617372--1617407	2	18.0	2	94	0	63	50	2	0	47	1.15
1618711--1618753	12	3.7	12	84	9	54	58	0	0	41	0.98
1624002--1624047	21	2.2	21	88	0	65	15	13	6	65	1.46
1632834--1632978	61	2.3	64	84	5	188	28	17	28	26	1.97
1639046--1639106	2	30.0	2	90	3	95	49	1	0	49	1.10
1639296--1639421	61	2.1	61	84	0	162	24	15	30	29	1.96
1639744--1639771	10	2.8	10	100	0	56	64	0	28	7	1.20
1644127--1644188	13	4.8	13	91	0	97	29	20	17	32	1.96
1644166--1644329	85	1.9	85	82	4	206	31	20	18	30	1.96
1644429--1644499	2	37.5	2	86	10	105	49	0	1	49	1.09
1644435--1644499	23	2.8	23	92	2	103	49	0	1	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1655813--1655891	30	2.6	30	85	0	104	29	7	22	40	1.82
1655995--1656075	24	3.4	24	79	12	78	25	25	19	28	1.99
1656008--1656067	24	2.4	25	86	8	79	28	23	20	28	1.99
1657760--1657795	16	2.2	16	95	0	63	47	8	25	19	1.77
1673479--1673518	17	2.3	18	86	4	55	30	10	27	32	1.89
1680837--1680864	1	28.0	1	100	0	56	100	0	0	0	0.00
1689510--1689559	3	17.3	3	87	8	77	68	0	0	32	0.90
1689897--1690066	83	2.0	84	86	3	236	21	21	24	32	1.98
1690064--1690129	29	2.3	28	92	5	105	31	9	12	46	1.72
1690131--1690731	36	17.1	36	76	12	556	40	14	18	27	1.89
1690325--1690389	21	3.4	21	68	24	70	41	12	21	24	1.87
1690131--1690731	175	3.4	174	86	6	769	40	14	18	27	1.89
1690304--1690731	101	4.1	101	80	6	401	39	14	18	27	1.89
1690202--1690713	276	1.9	275	89	1	810	40	14	17	27	1.88
1691128--1691232	37	2.8	37	86	4	149	40	14	14	31	1.86
1691763--1691822	19	3.0	20	76	13	63	31	5	1	61	1.27
1691837--1691891	2	27.5	2	100	0	110	49	0	0	50	1.00
1692114--1692140	2	13.5	2	100	0	54	48	0	0	51	1.00
1692144--1692173	4	7.2	4	92	7	51	23	3	0	73	0.98
1692178--1692234	23	2.4	22	78	18	53	15	8	0	75	1.04
1696663--1696704	16	2.8	14	83	16	57	80	7	11	0	0.88
1696697--1696730	16	2.1	16	100	0	68	76	11	5	5	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1697337--1697391	22	2.5	22	100	0	110	36	27	12	23	1.91
1698348--1699623	106	12.0	106	90	0	1901	34	25	17	23	1.96
1700354--1700458	37	2.8	37	88	0	156	40	15	15	29	1.88
1700986--1701041	21	2.6	22	78	16	64	30	3	0	66	1.09
1700953--1701023	19	3.4	19	71	25	54	29	2	2	64	1.22
1700987--1701034	19	2.5	19	80	12	53	29	4	0	66	1.10
1705475--1705515	4	10.5	4	80	15	50	73	2	0	24	0.96
1705468--1705515	15	3.2	15	85	5	62	72	2	0	25	0.95
1705454--1705525	30	2.4	30	81	9	76	69	1	2	26	1.10
1706863--1706918	3	19.3	3	78	7	62	73	0	0	26	0.84
1706866--1706900	9	3.9	9	100	0	70	77	0	0	22	0.78
1706859--1706921	21	2.9	23	82	13	80	73	0	0	26	0.84
1711474--1711509	17	2.1	17	100	0	72	50	0	0	50	1.00
1721166--1721238	21	3.4	21	68	7	65	31	26	21	20	1.98
1726355--1726401	25	1.9	25	86	4	69	48	6	0	44	1.28
1726444--1726484	18	2.3	17	87	8	55	60	2	0	36	1.10
1728940--1729071	65	2.0	64	86	1	183	28	21	10	39	1.86
1730228--1730359	65	2.0	64	85	1	174	31	22	8	37	1.84
1738380--1738472	46	2.0	47	85	6	127	33	21	10	34	1.88
1739480--1739526	25	1.9	25	86	4	69	46	6	2	44	1.40
1739569--1739609	18	2.3	17	87	8	55	60	4	0	34	1.18
1740884--1740983	12	7.3	14	73	19	79	57	2	1	40	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1740907--1740979	16	4.9	15	74	17	64	57	1	1	39	1.16
1740882--1740980	31	3.3	31	78	12	98	56	2	1	40	1.17
1748391--1748469	32	2.4	32	78	2	77	37	13	20	27	1.91
1751295--1751371	25	3.1	25	75	12	79	28	2	6	62	1.33
1751310--1751353	18	2.4	19	85	7	56	29	2	4	63	1.26
1752703--1752808	52	2.0	52	96	0	194	22	18	16	41	1.90
1758079--1758116	20	2.0	20	90	10	62	34	7	26	31	1.85
1758848--1758906	21	2.8	21	86	0	82	25	22	30	22	1.99
1765722--1765761	21	1.9	21	94	0	71	27	15	17	40	1.89
1774384--1774424	16	2.4	18	80	8	50	41	0	31	26	1.56
1775613--1775654	17	2.5	17	96	0	75	30	11	7	50	1.66
1780738--1780829	24	4.1	23	72	17	63	71	1	3	23	1.07
1780757--1780817	20	3.1	20	74	11	63	72	0	3	24	1.00
1780746--1780829	43	1.9	44	83	13	111	71	1	3	23	1.09
1780831--1781086	38	6.7	38	84	4	286	46	5	1	46	1.35
1781009--1781069	12	4.9	12	74	7	50	44	3	3	49	1.35
1780831--1781091	113	2.3	113	84	5	323	47	5	1	45	1.36
1781756--1782490	249	2.9	249	90	1	1100	25	19	23	31	1.98
1781709--1782451	334	2.2	332	81	5	817	25	19	23	31	1.98
1783676--1783858	95	1.9	94	87	5	271	30	16	18	34	1.93
1787647--1787680	18	1.9	17	94	5	59	76	0	5	17	0.98
1787640--1787695	17	3.1	18	80	12	62	75	0	3	21	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1787737--1787770	17	2.0	17	88	11	52	61	0	5	32	1.20
1788890--1788969	16	5.0	16	71	17	51	75	1	6	17	1.08
1788892--1788936	23	2.0	23	86	8	65	80	0	4	15	0.87
1788963--1789184	37	5.9	38	88	4	281	48	7	0	43	1.36
1788971--1789188	115	1.9	112	87	4	321	47	6	0	44	1.36
1789163--1789257	35	2.7	35	74	19	99	48	7	2	42	1.43
1789243--1789271	2	14.5	2	100	0	58	51	0	0	48	1.00
1790393--1790432	21	2.0	21	85	14	57	27	2	0	70	1.01
1790472--1790504	13	2.5	14	85	14	52	9	6	0	84	0.76
1790472--1790527	26	2.2	26	80	6	60	14	5	1	78	1.00
1790511--1790540	14	2.1	14	93	0	51	26	3	0	70	1.03
1793506--1793543	2	19.0	2	100	0	76	50	0	0	50	1.00
1794126--1794176	23	2.3	22	93	6	93	49	1	0	49	1.12
1810166--1810219	22	2.5	21	77	14	56	38	0	29	31	1.57
1810170--1810219	21	2.3	20	80	12	55	38	0	30	32	1.58
1817009--1817045	10	3.7	10	96	0	65	48	10	0	40	1.38
1819772--1819834	18	3.6	17	72	8	54	31	3	4	60	1.33
1822174--1822234	22	2.8	22	82	9	72	26	19	26	27	1.99
1822950--1822989	21	1.9	21	100	0	80	17	25	30	27	1.97
1824035--1824461	76	5.7	76	80	8	484	33	14	21	30	1.93
1824037--1824461	219	1.9	225	87	4	628	33	14	21	30	1.93
1825577--1825783	109	1.9	108	85	1	288	28	14	17	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1832242--1832547	108	2.8	108	86	2	420	24	17	19	38	1.92
1838706--1838843	63	2.1	63	81	4	150	23	6	16	52	1.67
1838702--1838783	34	2.4	36	76	14	82	24	3	17	54	1.58
1841556--1841614	30	1.9	31	86	3	84	13	25	10	50	1.72
1846793--1846846	23	2.3	23	87	6	74	53	0	0	46	1.00
1846793--1846857	23	2.9	23	84	8	64	50	0	0	49	1.00
1846811--1846872	32	2.0	31	90	3	97	46	0	0	53	1.00
1850532--1850561	2	15.0	2	92	0	51	53	0	0	46	1.00
1859500--1859556	16	3.5	15	78	17	60	61	3	0	35	1.13
1860046--1860092	21	2.2	23	77	14	55	53	12	6	27	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18