genome.fa.s7859.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007859.1 Hibiscus syriacus cultivar Beakdansim tig00110221_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3538007

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  2  of  18  ( 2075 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206667--206724	27	2.1	27	93	6	100	53	3	6	36	1.45
206667--206762	27	3.7	27	77	6	99	48	3	7	40	1.46
206728--206762	18	1.9	18	88	0	52	45	2	5	45	1.41
206650--206764	20	5.9	19	72	11	65	47	2	6	42	1.44
206759--206808	26	1.9	26	88	8	75	44	10	6	40	1.63
206787--206868	18	4.2	18	74	19	67	42	7	8	41	1.63
206837--206956	65	1.9	63	91	6	197	41	6	8	43	1.61
206950--206995	20	2.3	20	92	0	74	50	6	4	39	1.48
207010--207072	24	2.6	24	80	12	67	46	7	4	41	1.54
207067--207094	13	2.2	13	100	0	56	39	0	7	53	1.28
207067--207115	22	2.2	22	92	0	80	34	2	8	55	1.41
207067--207110	13	3.7	13	74	22	51	34	0	9	56	1.31
207148--207212	27	2.4	27	81	0	85	49	6	6	38	1.53
207209--207243	18	1.9	18	88	0	52	45	2	5	45	1.41
206965--207245	20	13.7	19	64	21	63	44	5	6	44	1.52
207287--207332	22	2.1	22	83	0	56	39	6	6	47	1.55
207463--207519	17	3.4	16	74	11	53	49	0	0	50	1.00
207462--207681	11	20.1	11	67	25	69	45	3	5	46	1.41
207437--207538	9	11.9	9	73	20	53	50	2	0	46	1.16
207447--207543	22	4.5	21	78	12	83	49	2	0	48	1.12
207612--207724	2	56.5	2	68	19	58	48	3	3	44	1.37
207597--207640	20	2.2	20	95	0	79	43	4	6	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207614--207675	29	2.2	28	91	2	97	48	1	4	45	1.33
207587--207724	20	7.0	19	70	16	68	46	3	5	44	1.42
207822--208322	212	2.3	215	91	2	805	28	9	8	52	1.65
213991--214043	24	2.2	24	86	3	72	39	5	24	30	1.78
216046--216083	19	2.0	19	100	0	76	21	21	15	42	1.89
219947--219976	15	2.0	15	93	0	51	26	16	13	43	1.85
224779--224805	14	1.9	14	100	0	54	14	22	11	51	1.73
230638--230696	23	2.7	23	84	7	79	20	37	23	18	1.94
230678--230717	21	1.9	21	89	0	62	25	40	25	10	1.86
234027--234082	24	2.3	24	96	0	103	33	17	3	44	1.66
235480--235524	23	1.9	24	86	4	65	62	0	0	37	0.96
236973--237086	3	39.0	3	81	8	137	61	1	0	36	1.07
237215--237624	76	5.4	76	98	0	795	36	22	20	20	1.95
238031--238686	224	2.9	223	87	4	918	28	19	13	38	1.90
238485--238529	23	1.9	23	82	13	56	15	26	6	51	1.68
238023--238689	111	6.0	114	87	6	879	29	19	13	37	1.90
239089--239143	22	2.5	22	93	0	101	40	14	10	34	1.81
240664--240881	84	2.6	84	100	0	436	35	22	14	27	1.93
242796--242845	14	3.7	13	84	10	64	0	14	0	86	0.58
242796--242837	14	2.9	14	92	3	66	0	11	0	88	0.53
242797--242845	13	3.5	15	83	13	68	0	14	0	85	0.59
242796--242841	24	1.9	24	90	0	74	0	13	0	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247485--247535	18	2.9	17	75	16	50	72	1	0	25	0.95
248083--248115	16	2.1	16	88	5	50	48	0	6	45	1.27
249693--249816	3	41.0	3	83	4	160	60	2	0	37	1.10
250307--250338	15	2.1	15	100	0	64	28	25	12	34	1.92
267993--268034	17	2.5	17	84	3	50	28	19	19	33	1.96
271834--271889	26	2.1	27	78	15	64	42	1	0	55	1.10
274699--274757	31	1.9	31	86	3	84	35	22	6	35	1.80
275947--275990	19	2.3	19	92	0	70	52	13	13	20	1.74
277080--277127	25	1.9	25	100	0	96	22	8	27	41	1.82
277753--277818	28	2.4	28	94	0	114	30	19	19	30	1.97
280676--280789	60	1.9	60	81	3	140	35	20	16	27	1.94
281132--281327	30	6.5	30	93	0	311	23	3	34	38	1.70
281518--281697	90	2.0	90	100	0	360	25	14	17	42	1.87
281693--281824	66	2.0	65	94	1	228	36	11	18	33	1.87
282468--282526	29	2.0	31	83	6	77	27	11	5	55	1.56
282583--282616	16	2.1	17	88	5	52	64	0	0	35	0.94
282990--283080	3	30.3	3	93	4	148	63	0	2	34	1.06
285395--285798	200	2.0	204	97	2	771	27	22	14	35	1.93
287342--287407	3	22.3	3	96	3	125	33	0	0	66	0.92
288889--288915	14	1.9	14	100	0	54	44	0	18	37	1.50
297554--297590	18	2.1	18	100	0	74	43	13	32	10	1.79
299032--299655	39	16.1	39	77	4	348	39	11	21	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299039--299668	78	8.1	77	74	8	438	39	12	21	26	1.88
299038--299670	117	5.4	119	78	5	492	39	12	21	26	1.88
299635--299693	23	2.6	23	88	0	82	38	11	23	25	1.89
299611--299730	62	2.0	60	82	8	145	40	12	22	25	1.89
299668--299769	37	2.7	38	80	11	120	38	10	26	24	1.88
299622--299875	99	2.5	100	80	8	275	40	11	23	24	1.87
299762--299872	39	2.9	38	76	6	125	42	9	23	24	1.84
301396--301435	13	3.1	13	85	0	53	12	22	2	62	1.42
303836--303927	46	2.0	47	85	10	127	26	15	3	55	1.55
304903--304957	23	2.4	23	87	0	83	34	21	3	40	1.71
307468--307493	2	13.0	2	100	0	52	50	0	0	50	1.00
310743--310785	18	2.5	17	82	10	52	48	27	2	20	1.62
313224--313716	246	2.0	246	98	1	954	32	18	16	32	1.93
321084--321108	10	2.5	10	100	0	50	32	28	0	40	1.57
324329--324370	20	2.1	20	82	8	50	66	0	26	7	1.17
324337--324370	13	2.5	14	90	4	52	70	0	23	5	1.09
327081--327120	17	2.4	17	100	0	80	17	37	0	45	1.49
340266--340320	22	2.5	22	78	0	65	30	9	21	38	1.85
345841--345886	6	7.7	6	90	0	65	2	13	45	39	1.55
345855--345895	18	2.3	18	86	0	55	2	17	43	36	1.62
346181--346222	22	1.9	22	85	0	57	30	9	21	38	1.85
348013--348338	163	2.0	163	100	0	652	29	13	22	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348977--351816	952	3.0	952	98	0	5419	31	14	15	38	1.87
360347--360395	18	2.7	18	100	0	98	22	18	32	26	1.97
360404--360441	20	1.9	20	88	0	58	36	23	18	21	1.95
360517--360551	2	17.5	2	100	0	70	48	0	0	51	1.00
364336--364373	20	1.9	20	88	0	58	36	23	18	21	1.95
364449--364473	2	12.5	2	100	0	50	48	0	0	52	1.00
381033--381072	21	1.9	21	89	0	62	25	40	25	10	1.86
387947--388755	204	4.0	204	92	1	1293	38	21	20	20	1.94
388869--389188	78	4.1	78	82	2	356	32	16	28	22	1.96
389944--389976	3	11.0	3	100	0	66	66	0	33	0	0.92
389827--390101	141	2.0	141	95	0	496	40	15	29	15	1.87
392534--392905	42	8.7	42	77	5	354	31	17	24	26	1.97
392534--392905	85	4.4	85	83	2	392	31	17	24	26	1.97
396728--396909	42	4.4	42	73	10	160	32	19	17	30	1.95
396620--396912	40	7.1	41	75	12	208	33	18	18	29	1.95
397195--397309	23	5.0	22	80	14	117	46	2	9	40	1.50
397193--397309	25	5.0	24	76	18	97	47	2	9	41	1.50
397163--397206	2	23.0	2	90	9	74	50	0	0	50	1.00
397294--397347	17	3.4	17	80	14	62	42	1	7	48	1.42
397294--397345	15	3.4	16	80	15	65	42	1	7	48	1.43
397339--397416	2	41.0	2	90	10	128	50	0	0	50	1.00
398786--398817	15	2.1	15	94	0	55	18	3	0	78	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398786--398826	20	2.0	20	86	9	57	19	2	2	75	1.03
411263--411304	21	2.0	21	86	9	59	26	14	16	42	1.86
417318--417372	21	2.6	21	94	0	92	29	18	23	29	1.98
426706--426738	17	1.9	17	100	0	66	36	18	21	24	1.95
443385--443544	65	2.5	64	84	6	198	27	19	23	29	1.98
443387--443586	65	3.1	63	79	13	185	27	19	24	29	1.98
448644--448672	14	2.1	14	100	0	58	51	6	0	41	1.28
453302--453358	22	2.7	21	76	12	64	33	28	14	24	1.94
454926--454955	14	2.1	15	93	6	53	6	3	26	63	1.35
457237--457301	18	3.4	18	66	25	53	50	13	4	30	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18