Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007860.1 Hibiscus syriacus cultivar Beakdansim tig00110223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941097

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1828 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2876285--2878252
199
9.9
199
98
0
3733
31
15
15
37
1.90
2878371--2878418
18
2.6
18
90
3
69
56
10
2
31
1.45
2882308--2882354
20
2.4
19
86
6
76
19
17
10
53
1.72
2888419--2888459
21
1.9
21
85
5
55
31
26
17
24
1.97
2890660--2890689
15
1.9
16
93
6
53
43
0
0
56
0.99
2891183--2891211
2
14.5
2
100
0
58
48
0
51
0
1.00
2892756--2892799
15
2.9
15
86
0
61
11
9
40
38
1.73
2897195--2897250
23
2.5
24
80
11
73
55
10
8
25
1.63
2897834--2897926
48
1.9
48
87
8
136
19
11
26
41
1.86
2897988--2898033
19
2.4
19
88
0
65
23
15
19
41
1.89
2898153--2898259
53
2.0
53
100
0
214
40
13
7
39
1.72
2901210--2901243
17
2.0
17
88
0
50
14
8
2
73
1.19
2904451--2904479
2
14.5
2
100
0
58
51
0
0
48
1.00
2904923--2905050
51
2.4
53
76
6
134
25
22
19
32
1.97
2905045--2905375
108
3.1
108
88
2
470
26
27
14
30
1.95
2905037--2905376
53
6.3
55
87
4
426
27
27
14
30
1.95
2905037--2905376
161
2.1
163
88
1
506
27
27
14
30
1.95
2905868--2905914
13
3.6
13
100
0
94
55
0
31
12
1.38
2906293--2906326
7
4.6
7
92
7
50
11
2
0
85
0.71
2906292--2906326
8
4.5
8
89
7
54
11
2
0
85
0.69
2906293--2906326
15
2.3
15
94
0
59
11
2
0
85
0.71
2909839--2909866
8
3.5
8
100
0
56
50
10
0
39
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2919605--2919635
2
15.5
2
100
0
62
51
0
0
48
1.00
2921245--2921511
133
2.0
133
99
0
525
37
16
7
39
1.76
2926413--2926471
31
1.9
31
100
0
118
35
10
27
27
1.89
2935218--2935253
15
2.4
15
95
0
63
13
5
0
80
0.88
2936784--2936830
13
3.8
12
78
13
51
12
27
0
59
1.34
2940134--2940185
16
3.2
17
72
22
58
42
0
21
36
1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!