genome.fa.s7860.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007860.1 Hibiscus syriacus cultivar Beakdansim tig00110223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941097

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  7  of  16  ( 1828 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
910105--910165	20	2.9	21	87	7	79	18	26	34	21	1.96
917491--918129	199	3.2	198	91	2	1041	31	17	16	34	1.92
917491--918129	99	6.4	99	90	3	989	31	17	16	34	1.92
923503--923542	17	2.4	17	100	0	80	35	0	17	47	1.48
925589--925625	3	12.3	3	94	0	65	64	0	2	32	1.07
927968--928025	23	2.5	23	78	13	73	43	1	0	55	1.10
927986--928044	29	2.0	28	84	15	75	44	1	0	54	1.10
931179--931220	2	21.5	2	95	4	77	50	0	0	50	1.00
932486--932601	56	2.0	58	91	8	191	26	8	22	42	1.82
936324--936352	14	2.1	14	100	0	58	58	6	6	27	1.50
937739--937770	14	2.2	15	94	5	57	56	0	3	40	1.15
938031--938089	21	2.8	21	84	0	91	8	30	40	20	1.82
939510--939544	2	18.0	2	94	5	63	51	0	0	48	1.00
940666--940723	18	3.2	18	75	22	50	75	3	5	15	1.11
940678--940746	23	3.0	22	76	18	68	78	5	4	11	1.07
940704--940766	26	2.2	30	83	13	80	76	6	7	9	1.16
940702--940773	36	2.0	37	83	8	94	76	5	8	9	1.15
941003--941040	18	2.1	19	90	5	60	73	0	7	18	1.06
941001--941057	20	2.9	20	79	12	64	70	0	8	21	1.14
941014--941069	22	2.5	22	78	16	62	69	0	3	26	1.04
943889--943936	9	5.1	10	78	16	50	0	20	0	79	0.74
943884--943936	28	2.0	26	85	14	72	1	22	0	75	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943897--943944	17	2.9	17	77	20	57	0	20	0	79	0.74
947360--947416	2	28.5	2	100	0	114	50	0	0	49	1.00
952014--952055	20	2.0	21	90	4	68	21	19	4	54	1.62
960384--960854	118	3.9	124	78	12	461	25	16	13	43	1.85
960868--960910	16	2.7	16	88	0	59	30	30	6	32	1.84
960957--960990	16	2.2	16	89	5	52	26	11	5	55	1.58
963375--963403	11	2.6	11	100	0	58	62	0	27	10	1.28
964420--964479	29	2.1	28	84	3	75	63	13	8	15	1.51
967164--967258	2	47.5	2	100	0	190	49	0	0	50	1.00
974280--974345	2	33.0	2	96	0	123	51	0	0	48	1.00
974532--974587	24	2.4	23	76	5	60	75	0	3	21	0.96
974536--974591	27	2.1	26	83	9	69	75	0	3	21	0.96
975219--975356	37	3.8	36	84	6	172	29	14	13	42	1.84
975253--975353	34	2.9	35	91	8	161	27	14	13	43	1.84
975902--976733	105	8.0	105	92	1	1278	22	17	25	33	1.96
977376--977532	68	2.4	66	83	4	199	36	9	21	32	1.86
977509--977789	36	8.0	35	77	10	252	40	13	19	26	1.89
977376--977769	65	5.8	66	70	13	219	39	11	20	28	1.87
977457--977770	138	2.3	137	83	1	405	40	12	19	27	1.88
977545--977733	102	1.9	102	86	2	272	40	12	19	28	1.88
977654--977823	36	4.8	36	85	5	166	40	15	21	22	1.91
978269--978304	18	2.0	18	94	0	63	44	30	5	19	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978719--978767	22	2.2	22	92	0	80	28	14	24	32	1.94
978731--978774	22	2.0	22	86	0	61	31	13	22	31	1.93
979419--979498	15	5.1	15	70	19	56	1	12	7	78	1.01
979419--979498	16	5.1	16	75	19	55	1	12	7	78	1.01
980652--980690	8	5.0	8	84	6	53	58	12	17	10	1.61
980652--980690	15	2.5	15	87	4	51	58	12	17	10	1.61
981211--981250	18	2.2	18	100	0	80	35	12	32	20	1.90
983787--983829	18	2.5	17	81	7	52	65	2	6	25	1.30
984185--984322	37	3.8	36	84	6	172	29	14	13	42	1.84
984219--984319	34	2.9	35	91	8	161	27	14	13	43	1.84
985484--985580	24	4.0	24	87	0	131	15	15	19	49	1.80
986710--986791	27	3.0	26	76	3	83	19	31	12	36	1.89
988442--988483	15	2.8	15	78	10	50	30	33	4	30	1.78
991643--991774	36	3.7	36	84	8	169	38	19	19	21	1.93
993046--993115	34	2.1	32	84	5	86	32	15	28	22	1.95
995834--995902	30	2.2	30	85	15	95	34	5	17	42	1.73
995843--995902	30	2.0	30	93	6	104	33	6	16	43	1.74
995983--996103	22	5.8	20	84	13	131	22	35	19	22	1.96
995983--996103	64	1.9	64	88	6	183	22	35	19	22	1.96
995983--996103	42	2.9	38	82	16	134	22	35	19	22	1.96
996124--996206	41	2.0	41	86	4	114	20	26	25	27	1.99
996124--996197	20	3.7	20	81	3	85	20	27	22	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996253--996306	21	2.6	21	100	0	108	27	29	24	18	1.98
996331--996370	20	1.9	22	90	10	66	37	40	10	12	1.77
996585--996654	34	2.1	32	86	5	95	31	15	30	22	1.95
997666--997698	16	2.1	16	100	0	66	57	24	12	6	1.57
997707--997783	31	2.5	31	100	0	154	27	10	14	48	1.76
997790--997878	16	5.7	16	90	2	137	59	17	11	11	1.60
998584--998620	14	2.6	14	91	0	56	59	16	10	13	1.61
999223--999267	23	2.0	23	86	8	65	48	0	0	51	1.00
999449--999489	19	2.2	19	95	0	73	24	24	29	21	1.99
1000572--1000610	16	2.5	15	87	4	60	25	0	17	56	1.41
1012341--1012547	7	26.0	8	67	26	63	72	0	17	10	1.11
1012379--1012552	7	23.3	7	71	16	93	73	0	17	8	1.07
1012400--1012547	16	9.4	16	73	21	93	73	0	16	9	1.08
1012379--1012547	41	4.3	40	74	16	165	73	0	17	8	1.07
1012379--1012546	66	2.5	66	79	12	170	73	0	17	8	1.07
1013901--1014382	55	8.9	55	82	8	519	28	16	24	31	1.96
1013901--1014390	106	4.5	107	82	6	544	27	16	24	30	1.97
1013897--1014390	161	3.0	161	81	7	547	28	17	24	30	1.97
1015538--1015576	16	2.5	15	87	4	60	25	0	17	56	1.41
1016874--1016941	29	2.3	30	80	10	77	42	8	17	30	1.80
1021189--1021228	11	3.7	11	86	6	55	20	37	20	22	1.94
1022887--1022933	19	2.3	21	82	7	62	10	14	14	59	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028575--1028621	21	2.1	21	84	7	58	38	2	2	57	1.23
1031829--1031898	30	2.3	30	87	2	95	40	10	24	25	1.86
1036754--1036813	15	3.9	15	79	12	68	21	30	26	21	1.99
1036757--1036825	32	2.2	32	89	5	104	21	30	27	20	1.98
1037191--1037319	30	4.3	30	86	3	145	33	25	19	21	1.97
1041557--1041589	15	2.2	15	94	0	57	60	12	6	21	1.53
1051624--1051749	40	3.2	40	87	4	193	25	15	26	33	1.95
1058972--1059130	40	4.0	40	95	0	282	24	16	26	32	1.96
1065952--1066008	20	2.8	20	72	0	60	24	14	29	31	1.94
1066693--1066724	15	2.1	15	94	0	55	21	6	12	59	1.55
1084304--1084394	39	2.3	39	90	0	137	31	8	14	45	1.75
1088479--1088536	17	3.2	17	76	16	55	68	0	8	22	1.16
1088487--1088548	18	3.4	17	79	16	63	70	0	6	22	1.09
1097287--1097369	29	2.8	29	92	1	139	40	12	14	32	1.83
1101988--1102063	29	2.6	29	95	0	143	40	14	14	30	1.86
1104290--1104336	13	3.3	15	77	17	55	46	0	4	48	1.21
1104653--1104684	6	5.3	6	100	0	64	34	0	0	65	0.93
1108281--1108395	59	1.9	59	87	3	169	34	21	2	40	1.67
1114216--1114268	21	2.5	21	84	0	70	20	26	18	33	1.96
1114258--1114349	20	4.6	20	86	2	139	35	20	21	21	1.96
1114258--1114349	41	2.3	40	90	1	139	35	20	21	21	1.96
1114529--1114590	22	3.0	21	72	18	58	25	37	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114926--1115015	20	4.6	20	80	5	94	14	15	22	47	1.81
1116900--1117009	20	5.5	20	91	0	166	40	22	17	20	1.92
1117056--1117122	20	3.3	20	93	0	107	20	19	22	37	1.95
1119259--1119354	33	2.9	34	85	3	122	42	19	21	15	1.88
1119364--1119450	19	4.8	19	76	15	94	12	22	17	47	1.81
1119475--1119557	20	4.2	20	87	3	114	16	20	26	36	1.94
1121988--1122041	24	2.2	24	93	0	90	40	20	18	20	1.91
1121988--1122055	24	2.8	24	84	0	64	38	20	17	23	1.93
1122905--1123028	20	6.2	20	81	3	151	23	20	17	37	1.94
1123025--1123070	21	2.2	21	88	0	65	36	17	28	17	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16