genome.fa.s7860.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007860.1 Hibiscus syriacus cultivar Beakdansim tig00110223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941097

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  5  of  16  ( 1828 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601909--601967	14	3.9	14	78	20	64	52	22	15	10	1.72
601984--602075	19	5.4	19	67	24	78	11	18	21	47	1.80
602001--602059	14	3.9	14	76	20	64	10	16	23	49	1.77
601984--602075	33	2.8	33	98	0	175	11	18	21	47	1.80
602060--602103	20	2.2	20	92	4	72	20	25	18	36	1.95
602649--602696	18	2.7	18	93	0	87	14	12	45	27	1.81
604016--604074	20	3.0	20	87	0	73	44	22	18	15	1.87
604337--604380	22	2.0	22	100	0	88	18	13	45	22	1.84
604567--604660	20	4.7	20	81	7	91	21	17	27	34	1.95
604587--604664	41	1.9	41	97	0	147	17	17	26	37	1.93
604585--604661	20	3.8	20	81	10	102	19	18	28	33	1.95
604589--604724	41	3.3	41	85	5	141	20	21	22	36	1.96
604650--604743	21	4.5	21	93	1	145	21	23	17	38	1.93
604650--604758	42	2.6	42	85	1	103	23	22	18	35	1.95
604733--604785	21	2.5	22	78	6	65	35	18	24	20	1.95
606025--606099	36	2.1	35	82	5	87	45	1	5	48	1.33
613201--613225	7	3.6	7	100	0	50	48	0	52	0	1.00
613897--613953	22	2.7	21	84	7	71	31	14	28	26	1.94
613963--614003	18	2.3	18	86	0	55	43	0	24	31	1.54
614358--614817	46	10.0	46	86	0	582	41	11	20	25	1.86
619059--619138	41	2.0	41	100	0	160	21	22	12	43	1.86
620299--620530	54	4.3	53	81	1	257	29	15	22	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620299--620530	107	2.2	108	82	0	277	29	15	22	31	1.95
621716--621833	15	7.9	14	69	17	60	21	4	1	72	1.10
621720--621833	6	17.5	6	73	19	52	21	4	1	72	1.11
621719--621771	22	2.4	21	81	12	61	18	5	0	75	0.99
621778--621900	3	37.7	3	81	11	79	28	3	3	65	1.24
621899--621927	3	9.7	3	100	0	58	0	0	31	68	0.89
621936--622057	2	64.0	2	87	9	157	43	0	0	56	0.99
622172--622204	16	2.1	16	88	11	50	9	6	9	75	1.18
622237--622261	2	12.5	2	100	0	50	48	0	0	52	1.00
622438--622506	37	1.9	35	85	5	93	17	4	7	71	1.26
622484--622516	16	2.2	15	89	10	50	15	0	0	84	0.61
625811--625879	25	2.8	25	82	6	79	27	23	24	24	2.00
630797--630880	25	3.4	25	80	4	82	32	22	21	23	1.98
635687--637143	84	17.3	84	82	3	1585	34	22	18	24	1.96
637752--637785	2	17.5	2	93	6	61	47	0	0	52	1.00
638899--639020	7	16.7	7	72	13	77	19	2	2	75	1.03
638960--639020	24	2.6	23	85	12	72	22	0	0	77	0.78
638964--639022	17	3.5	17	82	13	68	23	0	0	76	0.79
641809--641863	3	18.7	3	84	3	76	61	1	1	34	1.17
642118--642434	40	7.4	41	70	15	164	27	17	30	24	1.98
642064--642268	43	4.7	42	73	12	155	25	18	30	25	1.98
642047--642451	131	3.1	130	86	2	526	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
642511--642651	69	2.0	69	85	6	187	40	11	13	34	1.80
642511--642662	70	2.2	69	83	5	191	38	10	14	36	1.81
642665--642787	36	3.4	36	86	2	149	40	15	21	21	1.90
642690--642795	36	2.9	36	88	0	158	44	15	19	20	1.87
643121--643172	2	26.0	2	92	0	86	50	3	0	46	1.20
646980--647187	65	3.2	64	77	11	194	26	18	22	32	1.97
647645--647669	2	12.5	2	100	0	50	52	0	0	48	1.00
653676--653716	21	1.9	21	90	5	64	34	7	2	56	1.40
657073--657154	21	3.9	21	95	3	123	46	19	17	17	1.85
657057--657146	42	2.1	42	85	4	119	47	17	17	16	1.83
660677--660924	125	2.0	125	88	1	372	32	16	26	24	1.96
662127--662232	37	2.8	38	85	7	137	32	23	19	24	1.98
662606--663091	54	9.0	54	86	3	615	34	18	26	21	1.96
663083--663787	55	13.0	55	83	3	730	32	14	22	30	1.94
664116--664148	2	16.5	2	100	0	66	48	0	0	51	1.00
664148--664194	2	23.5	2	100	0	94	0	0	48	51	1.00
673151--673228	3	26.7	3	87	5	115	62	1	0	35	1.03
673261--673391	54	2.4	55	78	6	142	32	19	22	25	1.97
680427--680480	20	2.7	20	91	5	83	33	18	24	24	1.97
686888--686930	23	1.9	23	90	4	70	34	2	23	39	1.67
688995--689033	20	2.0	20	84	0	51	38	5	23	33	1.77
690856--690940	37	2.3	37	77	6	100	68	0	9	22	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691407--691508	34	2.8	37	83	8	138	30	14	13	41	1.85
692258--693426	106	11.0	106	90	1	1743	23	17	24	34	1.96
692259--693426	529	2.2	530	91	0	1874	23	17	24	34	1.96
694854--694935	7	11.6	7	75	11	60	1	12	6	80	0.95
694854--694938	20	4.1	20	74	15	73	1	11	7	80	0.97
694854--694938	24	3.6	23	76	12	66	1	11	7	80	0.97
694877--694935	15	3.9	15	81	16	68	0	13	5	81	0.85
694877--694935	31	1.9	31	89	6	93	0	13	5	81	0.85
698276--698304	15	1.9	15	100	0	58	82	6	3	6	0.93
699429--699463	18	2.1	18	89	10	56	71	0	2	25	1.00
699574--699655	21	4.2	21	70	20	63	65	1	7	25	1.25
701708--701818	40	2.8	40	83	4	136	36	27	14	20	1.92
701806--701875	19	3.7	19	86	3	88	34	21	12	31	1.91
701708--701875	20	8.6	20	75	10	116	35	25	14	25	1.93
702782--702827	24	1.9	24	95	0	83	23	21	21	32	1.98
702781--702834	24	2.2	24	86	0	81	22	18	20	38	1.93
703009--703033	12	2.1	12	100	0	50	72	0	28	0	0.86
704588--704623	18	2.0	18	94	0	63	55	25	2	16	1.55
704930--704991	20	3.1	20	83	0	88	40	22	19	17	1.91
705148--705196	25	2.0	25	95	0	89	26	8	20	44	1.79
705584--705620	18	2.1	18	89	0	56	32	5	10	51	1.60
705576--705628	24	2.2	24	86	0	70	35	3	13	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705932--706018	39	2.2	39	95	0	156	47	19	14	18	1.83
706273--706310	20	1.9	20	100	0	76	13	18	26	42	1.87
706369--706508	66	2.2	60	85	7	172	51	17	0	30	1.51
706419--706460	14	3.0	14	82	0	57	50	19	0	30	1.48
710121--710159	20	2.0	20	90	5	62	10	17	23	48	1.78
710192--710223	13	2.5	13	100	0	64	78	15	6	0	0.95
710196--710229	13	2.8	12	91	8	52	76	14	8	0	1.01
710436--710493	22	2.6	22	86	5	73	22	15	39	22	1.91
710614--710738	20	6.2	20	79	10	148	20	17	22	40	1.92
710731--710770	21	1.9	21	100	0	80	42	17	20	20	1.89
710787--710836	20	2.5	20	86	0	73	26	12	34	28	1.92
711274--711307	10	3.5	10	92	4	52	73	0	0	26	0.83
711964--711988	7	3.6	7	100	0	50	24	0	0	76	0.80
713266--713383	38	3.1	37	69	12	89	52	0	3	43	1.23
714100--714138	20	2.0	20	85	9	55	58	2	2	35	1.25
716639--716674	14	2.6	14	90	0	54	77	2	2	16	1.00
716657--716695	20	2.0	20	84	0	51	82	0	7	10	0.86
716888--716927	10	4.2	9	87	12	62	87	2	0	10	0.63
716956--716992	17	2.1	18	90	5	58	78	5	0	16	0.93
716971--717029	27	2.2	26	82	8	66	81	5	5	8	0.98
716961--717013	17	3.1	16	80	20	54	81	1	3	13	0.92
717041--717071	2	15.5	2	100	0	62	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717981--718018	20	1.9	20	94	0	67	18	15	31	34	1.92
718363--718389	2	13.5	2	100	0	54	51	0	0	48	1.00
718412--718487	9	8.8	9	72	15	54	72	1	2	23	1.05
718412--718495	30	2.8	31	84	10	95	72	1	2	23	1.03
721292--721323	9	3.6	9	95	0	55	0	18	0	81	0.70
721367--721401	8	4.4	8	85	0	52	2	8	2	85	0.79
731824--731870	15	3.1	15	79	14	51	82	2	2	12	0.84
731961--732038	3	26.7	3	94	5	142	66	0	0	33	0.92
732218--732259	17	2.5	17	92	3	68	69	7	4	19	1.31
732323--732364	16	2.4	18	80	11	52	76	0	0	23	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16