genome.fa.s7860.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007860.1 Hibiscus syriacus cultivar Beakdansim tig00110223_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2941097

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1828 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156938--157199	107	2.4	107	90	0	407	17	25	24	32	1.97
161503--161551	21	2.3	21	92	0	80	10	32	36	20	1.86
168824--168886	8	7.9	8	98	0	117	25	9	25	39	1.86
169820--169865	6	7.7	6	77	18	51	47	21	2	28	1.62
182642--182683	21	2.0	20	82	13	50	19	2	7	71	1.20
182772--182877	43	2.5	43	95	0	194	34	15	13	36	1.86
182993--183429	119	3.7	118	87	2	601	37	15	22	24	1.92
183646--183679	11	3.0	11	87	8	50	79	0	14	5	0.91
184358--184410	20	2.6	20	80	11	63	26	9	9	54	1.63
184597--184638	21	2.0	20	82	13	50	19	2	7	71	1.20
189395--189491	38	2.6	36	74	6	88	23	17	17	41	1.90
189446--189757	75	4.1	75	86	6	436	30	16	13	40	1.86
189446--189758	152	2.1	149	91	1	500	30	16	13	39	1.86
189762--190663	116	7.6	117	80	8	999	29	19	16	34	1.94
190142--190201	20	3.0	20	62	13	52	33	16	18	31	1.93
189760--190457	39	18.0	39	86	3	962	29	19	16	34	1.94
190446--190475	15	2.0	15	100	0	60	46	33	6	13	1.69
190330--190587	131	2.0	130	87	2	374	30	22	15	31	1.95
190369--190547	92	1.9	92	85	6	247	31	22	15	31	1.94
190461--190663	39	5.3	39	90	1	311	29	21	16	33	1.95
190461--190663	77	2.6	77	87	2	309	29	21	16	33	1.95
191027--191207	91	2.0	91	88	4	267	37	16	22	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191118--191555	119	3.7	119	87	2	623	36	14	22	25	1.93
192727--192768	21	2.0	20	82	13	50	19	2	7	71	1.20
192746--192802	16	3.5	16	79	15	64	17	1	7	73	1.14
196038--196091	3	18.0	3	92	0	81	29	1	37	31	1.68
198534--198605	22	3.3	22	65	18	60	36	20	15	27	1.93
198534--198666	43	3.1	43	92	0	212	35	22	15	26	1.94
198643--198687	21	2.1	21	88	8	65	35	24	17	22	1.95
199429--199488	19	3.0	20	79	13	63	26	31	21	20	1.98
199435--199488	21	2.7	20	82	5	65	27	27	24	20	1.99
202106--202144	19	2.0	21	85	14	57	66	2	0	30	1.05
205230--205267	15	2.5	15	100	0	76	34	26	15	23	1.95
207785--207827	20	2.2	19	84	12	52	65	2	2	30	1.18
208797--208835	12	3.1	12	82	13	51	66	0	0	33	0.92
209079--209110	6	5.3	6	92	0	55	53	18	12	15	1.73
211822--212092	146	1.9	146	98	1	528	11	18	21	48	1.80
215955--216000	16	2.8	16	86	6	56	50	2	2	45	1.26
217899--218246	173	2.0	173	99	0	687	35	14	18	31	1.91
218969--219004	18	2.0	18	88	0	54	38	11	11	38	1.76
224483--224539	20	2.8	21	84	10	73	33	12	26	28	1.92
224613--224655	22	1.9	23	85	4	61	44	11	23	20	1.84
225216--225268	15	3.4	15	77	10	52	43	5	18	32	1.74
225420--225517	23	4.3	23	79	13	96	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230396--230467	20	3.5	20	75	9	58	34	11	26	27	1.90
231281--231357	23	3.3	23	88	1	109	25	14	27	32	1.94
231924--231956	11	3.0	11	100	0	66	36	9	9	45	1.68
234246--234305	26	2.4	26	80	5	79	41	3	25	30	1.71
237059--237129	31	2.3	31	85	0	88	21	4	23	50	1.66
240583--240628	9	5.4	9	80	10	53	58	0	2	39	1.10
245693--245735	20	2.2	20	86	0	59	34	13	16	34	1.88
253443--253483	21	2.0	21	85	0	55	14	24	0	60	1.34
256111--256153	20	2.2	20	86	0	59	34	13	16	34	1.88
266506--266565	25	2.4	25	91	0	102	53	5	6	35	1.49
266572--266696	37	3.0	42	78	15	152	26	7	26	40	1.82
266816--266895	34	2.4	33	87	6	117	51	1	2	45	1.22
269295--269468	27	6.2	27	72	13	127	40	4	14	40	1.65
269248--269438	90	2.1	90	88	0	283	37	4	15	41	1.68
269386--269463	25	3.0	25	81	3	93	46	3	11	38	1.59
269301--269542	115	2.1	116	88	1	360	40	4	14	40	1.67
271017--271266	83	3.0	84	76	9	285	22	19	25	33	1.97
271273--271330	28	2.1	28	87	6	82	32	8	17	41	1.80
271297--271450	67	2.3	69	83	6	181	38	12	19	29	1.88
271519--271583	21	3.4	20	68	24	59	40	12	23	24	1.89
271499--271605	36	3.0	36	93	1	171	38	14	21	26	1.91
275420--275480	24	2.5	24	76	5	61	40	13	19	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277022--277051	13	2.3	13	94	0	51	70	0	0	30	0.88
277903--278027	21	6.0	21	68	3	83	30	25	19	24	1.98
277883--277948	20	3.2	20	63	4	51	22	21	24	31	1.98
277844--277962	41	2.9	41	94	0	211	26	21	21	30	1.98
277896--278024	62	2.1	62	92	0	213	28	25	19	26	1.99
279160--279224	21	3.1	21	62	4	51	26	23	23	27	2.00
279181--279244	20	3.2	20	64	4	56	28	21	25	25	1.99
279155--279323	41	4.0	41	91	6	275	28	21	21	27	1.99
279162--279323	86	1.9	86	97	0	306	29	21	21	27	1.99
281862--282123	95	2.7	95	78	7	256	48	16	3	31	1.63
282344--282536	100	1.9	100	81	10	234	54	10	2	31	1.48
304716--304796	29	2.8	29	82	0	108	48	4	8	38	1.56
305031--305073	19	2.3	19	84	8	52	53	2	0	44	1.13
305482--305562	30	2.7	30	81	7	94	40	9	12	37	1.76
305865--305907	17	2.5	17	80	0	50	55	0	0	44	0.99
305850--305940	39	2.4	38	82	15	100	51	1	1	46	1.15
305963--306012	18	2.7	18	78	3	55	54	0	4	42	1.19
306208--306234	14	1.9	14	100	0	54	48	7	0	44	1.31
307842--307868	2	13.5	2	100	0	54	48	0	0	51	1.00
311240--311611	37	9.8	36	71	18	238	43	4	10	42	1.58
311221--311315	42	2.2	43	80	14	117	45	2	7	45	1.43
311359--311386	14	2.0	14	100	0	56	42	7	7	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311240--311611	118	3.2	114	78	9	319	43	4	10	42	1.58
311654--311717	28	2.3	28	78	13	78	32	0	3	64	1.10
311654--311717	12	5.7	11	77	15	60	32	0	3	64	1.10
311654--311697	22	1.9	24	86	9	65	31	0	2	65	1.05
313097--313149	29	1.9	26	85	11	70	18	5	0	75	0.99
325249--325596	38	9.6	36	72	22	239	44	3	9	42	1.53
325249--325595	37	9.6	36	72	15	243	44	3	9	42	1.53
325350--325401	25	2.2	24	93	6	88	44	3	7	44	1.51
325274--325478	102	2.0	99	87	4	295	43	4	9	41	1.59
325875--325907	14	2.4	14	94	0	57	33	6	30	30	1.82
326248--326369	64	1.9	64	86	5	174	31	23	16	28	1.96
332930--332984	21	2.6	21	76	0	56	20	43	7	29	1.78
334858--334904	19	2.6	17	78	21	51	25	29	17	27	1.97
334806--335016	65	3.2	64	77	10	205	30	25	17	27	1.97
337212--337325	45	2.5	46	80	7	117	20	9	0	69	1.22
338120--338156	19	1.9	19	88	0	56	35	2	0	62	1.10
344503--344576	20	3.7	20	80	3	94	40	18	22	17	1.91
344520--344586	21	3.2	21	78	4	91	41	17	23	16	1.89
344503--344592	41	2.2	41	97	0	171	41	17	23	17	1.90
344626--344678	20	2.7	20	93	0	88	28	28	18	24	1.98
344866--344909	22	2.0	22	95	0	79	20	45	15	18	1.85
345188--345230	20	2.2	20	95	0	77	9	18	18	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346550--346594	18	2.5	18	88	0	72	26	44	15	13	1.83
347087--347131	20	2.3	20	84	3	65	37	15	24	22	1.93
347131--347220	14	5.9	14	75	19	81	48	25	16	8	1.75
347115--347237	32	3.8	33	95	2	214	47	23	17	10	1.79
347254--347311	14	3.9	14	79	16	71	8	17	25	48	1.75
347249--347327	32	2.4	33	95	2	142	10	18	24	46	1.80
347268--347385	20	6.4	19	77	11	95	13	20	24	41	1.88
349235--349270	14	2.6	14	90	0	54	30	0	22	47	1.52
349358--349473	38	3.2	36	89	6	139	44	18	21	14	1.86
349387--349492	19	5.8	19	91	8	177	47	16	21	14	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16