genome.fa.s7884.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007884.1 Hibiscus syriacus cultivar Beakdansim tig00110264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2814991

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1544 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279579--279676	19	5.4	19	84	13	143	45	17	22	14	1.84
279579--279695	53	2.2	53	98	1	227	44	17	23	13	1.85
279685--279906	19	12.7	19	76	18	241	14	21	18	45	1.84
279691--279878	52	3.6	52	98	0	358	13	22	17	46	1.83
279709--279920	33	6.2	33	76	14	225	13	21	18	46	1.83
282220--282244	12	2.1	12	100	0	50	0	28	0	72	0.86
282419--282465	24	2.0	24	87	8	69	38	21	14	25	1.92
283147--283396	20	12.5	20	87	1	259	19	18	24	37	1.94
283383--283465	21	4.0	21	73	6	78	25	16	24	33	1.96
283363--283461	42	2.4	43	77	11	100	21	18	23	37	1.94
284883--285081	85	2.4	84	86	5	260	51	4	4	39	1.43
295053--295086	14	2.5	13	86	9	50	20	8	2	67	1.31
300462--300495	13	2.6	13	95	0	59	26	5	11	55	1.58
306087--306126	20	2.0	20	95	0	71	10	22	25	42	1.84
306995--307019	13	1.9	13	100	0	50	24	12	24	40	1.88
307092--307131	14	2.8	14	84	3	53	70	0	0	30	0.88
307086--307131	15	2.9	16	75	24	53	69	0	0	30	0.89
307290--307363	31	2.4	31	90	4	114	20	25	17	36	1.94
311287--311408	60	2.0	60	90	0	190	34	12	21	31	1.90
313896--313932	18	2.1	18	94	0	65	27	16	27	29	1.97
323271--323312	22	1.9	22	85	9	59	38	2	4	54	1.34
339205--339263	21	2.7	22	73	5	66	22	23	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339248--339365	20	5.9	20	81	0	128	27	25	21	26	1.99
339788--339855	20	3.5	20	81	2	84	13	14	22	50	1.77
339788--339863	40	1.9	39	81	2	89	15	14	21	48	1.80
343163--343367	20	10.9	20	70	15	123	27	15	21	35	1.94
343203--343359	54	2.9	54	87	0	224	24	15	23	36	1.94
343338--343607	140	1.9	140	96	0	495	43	15	12	28	1.83
344291--344346	20	2.8	20	88	0	85	28	17	14	39	1.89
348413--348520	51	2.2	51	93	3	184	24	25	22	28	1.99
352634--352668	18	1.9	18	100	0	70	25	22	22	28	1.99
354177--354397	110	2.0	111	90	0	354	47	9	8	35	1.66
354669--354787	51	2.3	50	84	4	141	20	31	31	15	1.94
355659--355739	29	2.8	28	81	9	83	27	14	6	51	1.66
355874--355898	4	6.2	4	100	0	50	24	0	0	76	0.80
355716--355977	135	1.9	134	84	3	348	26	13	11	48	1.77
356177--356212	16	2.2	16	90	0	54	27	11	5	55	1.57
358916--358952	2	18.5	2	100	0	74	48	0	0	51	1.00
358993--359031	17	2.3	17	86	0	51	17	0	0	82	0.68
358946--359027	28	2.8	29	73	20	73	21	3	2	71	1.13
359282--359345	19	3.4	18	78	18	60	12	9	1	76	1.08
359381--359433	18	2.7	20	80	19	67	24	1	3	69	1.15
363076--363108	12	2.6	13	90	4	50	39	0	0	60	0.97
364552--364740	8	23.1	8	68	18	52	65	1	2	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364551--364637	13	6.4	13	67	23	54	70	0	1	28	0.95
364552--364635	4	20.8	4	74	16	57	70	0	1	28	0.95
365883--365972	39	2.5	35	85	7	108	27	8	24	38	1.85
365959--366074	36	3.2	36	84	7	144	41	14	18	25	1.89
366183--366255	37	2.0	37	94	0	128	41	13	19	26	1.88
366158--366395	102	2.3	102	90	0	368	37	12	18	31	1.88
366304--366482	87	2.1	87	92	0	295	35	12	18	32	1.89
366202--366587	189	2.0	189	84	2	506	38	11	18	31	1.87
366740--367061	106	3.0	106	89	1	484	22	19	24	33	1.97
367641--367746	32	3.3	32	85	2	124	35	18	11	33	1.87
368685--368822	69	2.0	69	90	2	215	24	13	23	37	1.92
368912--368942	16	1.9	16	100	0	62	6	12	3	77	1.08
372099--372214	23	4.9	23	70	19	78	75	1	4	18	1.05
372100--372216	46	2.5	46	79	17	125	75	1	4	18	1.06
372098--372216	17	7.6	16	68	16	79	75	1	4	18	1.05
372097--372187	29	3.1	28	73	20	80	76	2	5	15	1.06
372163--372248	36	2.4	36	84	3	102	67	0	2	30	1.03
372096--372214	8	14.9	8	66	15	59	75	1	4	18	1.05
372127--372225	24	4.0	24	74	16	78	72	2	4	21	1.11
372136--372227	26	3.7	25	81	8	98	71	2	2	23	1.08
372349--372375	11	2.5	11	100	0	54	92	0	0	7	0.38
372412--372450	14	2.7	15	88	4	53	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376112--376155	6	7.3	6	89	0	70	31	15	2	50	1.57
377710--377744	18	1.9	18	88	11	54	54	5	17	22	1.64
378492--378520	14	2.1	14	93	6	51	37	0	31	31	1.58
378621--378924	149	2.0	149	98	0	581	27	17	20	34	1.95
378903--378947	23	2.0	23	86	0	63	20	24	28	26	1.99
389723--389759	18	2.1	18	100	0	74	37	32	18	10	1.86
390296--390342	18	2.7	18	90	3	69	27	27	8	36	1.86
395745--395802	27	2.1	27	84	6	73	39	6	3	50	1.46
396184--396213	3	10.0	3	100	0	60	0	33	0	66	0.92
401639--401705	31	2.2	31	83	0	80	35	19	14	29	1.92
404437--404496	22	2.7	22	77	12	59	21	6	3	68	1.28
404812--404853	16	2.5	18	85	11	54	33	0	2	64	1.07
408542--408643	11	9.3	11	97	0	195	53	0	26	18	1.51
409075--409131	21	2.7	21	83	5	71	31	10	14	43	1.79
409123--409151	14	2.1	14	100	0	58	41	6	13	37	1.72
411744--411809	21	3.3	19	74	15	69	22	21	22	33	1.97
412432--412458	6	4.5	6	100	0	54	0	14	51	33	1.43
412556--412712	21	7.5	21	86	7	212	24	22	24	29	1.99
413538--413583	19	2.4	19	96	0	83	4	13	34	47	1.62
415730--415848	59	2.0	59	81	3	141	41	8	22	27	1.83
415940--416096	62	2.5	63	87	1	208	22	15	21	40	1.91
415942--416096	31	5.0	31	84	3	186	22	16	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417354--417404	12	4.6	11	77	13	52	54	1	1	41	1.22
420454--420525	17	4.2	17	80	5	74	38	13	6	40	1.72
433097--433158	4	15.0	4	85	6	63	70	1	4	22	1.14
433093--433163	34	2.1	35	86	7	101	71	1	4	22	1.11
433093--433163	30	2.4	30	86	6	92	71	1	4	22	1.11
433255--433316	13	5.0	13	70	18	51	48	9	0	41	1.36
433169--433446	37	7.9	36	81	10	281	48	7	1	43	1.38
433415--433467	21	2.5	22	87	3	72	45	9	0	45	1.36
433415--433473	21	2.8	20	82	12	66	44	8	0	47	1.33
437476--437582	51	2.1	51	84	10	139	20	30	30	17	1.96
439216--439299	35	2.5	33	83	13	100	58	8	5	27	1.51
439294--439318	13	1.9	13	100	0	50	72	8	0	20	1.10
439364--439409	13	3.6	13	77	13	51	69	10	0	19	1.17
440639--440692	22	2.7	20	76	15	58	53	14	0	31	1.41
440981--441049	23	3.0	23	80	0	84	33	26	23	17	1.96
441439--441493	2	27.5	2	100	0	110	49	0	0	50	1.00
444911--444982	28	2.6	29	81	16	89	63	2	0	33	1.08
444948--444981	17	1.9	18	88	5	52	64	5	0	29	1.17
448833--448860	14	2.0	14	100	0	56	21	50	21	7	1.72
455316--455361	19	2.4	19	92	0	74	21	19	30	28	1.98
458735--458769	16	2.2	16	100	0	70	22	20	8	48	1.76
460502--460562	21	3.2	21	65	29	64	42	21	4	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460463--460568	35	3.0	35	94	4	178	46	18	5	29	1.72
465070--465169	35	2.8	36	87	6	141	47	17	6	30	1.71
465858--465890	15	2.3	15	89	5	50	69	12	15	3	1.30
469000--469025	3	8.7	3	100	0	52	69	0	30	0	0.89
469455--469493	20	2.0	20	85	10	53	41	0	10	48	1.37
472358--472452	35	2.7	35	90	0	145	15	12	22	49	1.78
477403--477456	20	2.7	19	75	8	63	33	31	18	16	1.93
477506--477558	20	2.7	20	85	5	72	45	24	16	13	1.83
477567--477775	20	10.4	20	77	3	177	39	22	17	20	1.92
477567--477780	40	5.3	40	85	0	257	39	22	17	20	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13