genome.fa.s7884.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007884.1 Hibiscus syriacus cultivar Beakdansim tig00110264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2814991

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  9  of  13  ( 1544 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1675777--1675844	8	8.4	8	71	19	52	35	0	0	64	0.94
1675780--1675827	16	2.9	16	87	12	71	37	0	0	62	0.95
1690149--1690198	24	2.1	24	85	7	66	26	2	12	60	1.43
1693509--1693617	51	2.2	49	80	8	112	17	29	28	24	1.97
1693523--1693624	51	2.0	51	82	3	125	17	28	27	26	1.98
1693828--1693866	18	2.2	18	90	4	62	30	2	2	64	1.21
1693942--1694151	111	1.9	111	96	0	393	37	5	11	45	1.64
1696036--1696060	12	2.1	12	100	0	50	32	24	36	8	1.84
1701032--1701136	34	3.1	34	98	1	201	32	17	9	40	1.81
1716734--1716767	16	2.1	16	100	0	68	23	0	35	41	1.55
1726322--1726399	23	3.5	22	72	10	70	37	17	26	17	1.93
1727680--1727779	50	2.0	50	84	3	130	14	14	33	39	1.85
1728622--1728698	37	2.1	37	85	4	102	49	1	2	46	1.23
1733222--1733279	19	3.1	19	74	0	53	50	13	17	18	1.79
1736721--1736768	20	2.4	20	100	0	96	18	20	29	31	1.97
1742935--1743151	107	2.0	109	84	3	287	40	11	13	34	1.81
1743651--1743760	50	2.2	49	88	1	157	39	20	0	40	1.53
1743651--1743767	25	4.8	24	81	10	130	37	20	0	41	1.53
1744456--1744489	17	1.9	18	88	5	52	79	2	11	5	1.02
1745004--1745028	12	2.1	12	100	0	50	40	8	36	16	1.77
1745057--1745112	29	1.9	29	92	0	94	14	37	28	19	1.91
1745128--1745204	33	2.3	33	86	0	109	10	37	25	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1745277--1745334	29	2.0	29	89	0	89	22	27	36	13	1.92
1747204--1747267	10	5.7	11	75	20	53	40	1	1	56	1.18
1747186--1747257	24	2.8	25	77	10	65	40	2	1	55	1.23
1747212--1747289	36	2.1	37	90	2	122	44	5	2	47	1.38
1747217--1747270	16	3.1	16	71	19	54	44	1	1	51	1.22
1747607--1747643	13	2.9	14	88	11	53	37	18	2	40	1.65
1747924--1747974	22	2.3	22	80	6	59	39	27	0	33	1.57
1751574--1751620	14	3.6	14	77	13	55	21	2	8	68	1.27
1751567--1751620	26	2.1	27	89	6	85	22	3	9	64	1.38
1755069--1755101	15	2.1	16	88	5	50	66	3	6	24	1.28
1756638--1756671	6	5.7	6	89	0	50	79	0	2	17	0.86
1757692--1757751	19	3.0	21	79	16	65	38	1	1	58	1.18
1759334--1759366	13	2.5	13	95	0	57	60	15	6	18	1.54
1759906--1759975	13	5.6	12	77	14	70	77	0	5	17	0.96
1759899--1759981	29	2.8	30	81	5	89	75	0	7	16	1.01
1760270--1760321	19	2.6	19	77	17	52	61	0	3	34	1.14
1760852--1760948	37	2.6	37	85	0	131	30	12	15	41	1.84
1761678--1762523	106	8.0	106	87	2	1109	23	18	23	34	1.96
1763328--1763404	22	3.5	22	92	0	127	22	11	27	38	1.88
1767489--1767528	10	3.9	10	83	6	53	77	0	2	20	0.88
1767488--1767534	21	2.4	18	80	16	58	78	0	2	19	0.85
1768453--1768546	16	5.7	15	72	17	62	75	0	7	17	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1768515--1768548	4	8.2	4	93	6	59	73	0	2	23	0.97
1768554--1768610	2	28.5	2	96	0	96	47	0	0	52	1.00
1768873--1768928	23	2.5	23	82	8	62	60	0	3	35	1.14
1769464--1769558	37	2.6	37	89	0	145	29	13	15	41	1.86
1770366--1770406	22	1.9	22	90	5	66	24	41	24	9	1.85
1776171--1776226	23	2.5	23	88	5	80	25	30	25	19	1.98
1777832--1777872	18	2.3	18	86	0	55	41	24	29	4	1.75
1791370--1791417	16	3.1	14	76	23	51	50	4	0	45	1.21
1797358--1797393	12	3.0	12	95	0	63	44	30	8	16	1.77
1802624--1802764	35	4.0	35	77	3	149	35	17	17	29	1.93
1810477--1810504	8	3.5	8	100	0	56	35	10	10	42	1.74
1815226--1815383	21	7.8	20	72	7	86	38	25	17	18	1.92
1815350--1815543	20	9.6	20	81	5	221	35	25	19	19	1.95
1815350--1815543	60	3.2	60	83	0	253	35	25	19	19	1.95
1815926--1815996	33	2.2	33	92	0	115	11	22	18	47	1.80
1816076--1816181	21	5.6	20	72	16	91	45	17	24	12	1.83
1816089--1816185	20	5.2	20	72	18	100	46	17	24	11	1.81
1816069--1816185	41	3.1	38	80	14	136	46	16	25	11	1.81
1816136--1816192	14	3.7	14	75	20	60	43	22	24	8	1.81
1816128--1816208	33	2.5	33	95	0	144	46	22	22	8	1.78
1816204--1816331	19	7.1	19	71	19	87	10	25	18	45	1.82
1816226--1816282	14	3.7	14	75	20	60	8	24	22	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1816209--1816331	33	3.5	33	88	10	165	10	24	18	46	1.81
1816267--1816331	21	3.1	21	82	4	96	10	26	15	47	1.78
1818028--1818403	93	4.1	93	99	0	736	22	12	19	46	1.83
1818451--1818579	19	7.3	19	75	17	125	45	28	17	8	1.77
1818487--1818579	33	2.8	32	91	4	150	46	27	18	7	1.76
1818451--1818579	52	2.5	52	74	14	140	45	28	17	8	1.77
1818575--1818747	19	9.6	19	78	12	168	10	19	23	46	1.81
1818597--1818653	14	3.7	14	77	20	60	10	21	22	45	1.82
1818575--1818747	33	4.8	38	82	5	168	10	19	23	46	1.81
1820672--1820707	14	2.6	14	95	0	63	33	0	22	44	1.53
1820813--1820910	19	5.4	19	84	13	143	45	17	22	14	1.84
1820813--1820929	53	2.2	53	98	1	227	44	17	23	13	1.85
1820919--1821311	19	22.7	19	74	20	371	14	22	17	46	1.84
1820925--1821225	33	8.8	33	75	15	274	13	22	17	46	1.83
1820919--1821325	52	7.9	52	88	6	523	14	22	17	45	1.84
1821152--1821206	14	3.6	14	73	21	56	10	23	20	45	1.82
1821028--1821311	86	3.3	85	89	5	405	13	21	17	46	1.83
1821218--1821344	33	3.8	34	83	7	161	13	19	20	46	1.83
1820976--1821311	138	2.4	138	87	5	536	13	22	17	46	1.83
1823608--1823632	12	2.1	12	100	0	50	0	28	0	72	0.86
1823807--1823853	24	2.0	24	87	8	69	38	21	14	25	1.92
1824536--1824765	20	11.5	20	84	1	219	19	18	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1824758--1824834	21	3.7	21	72	6	75	29	16	22	31	1.96
1828688--1828734	6	7.8	6	85	0	67	31	4	44	19	1.70
1829755--1829822	23	2.8	24	80	8	93	30	7	13	48	1.69
1833483--1833535	2	26.5	2	100	0	106	50	0	0	49	1.00
1835082--1835160	19	4.1	19	83	4	95	17	25	26	30	1.97
1835103--1835162	9	6.3	9	75	9	57	15	28	28	28	1.96
1835158--1835218	17	3.3	17	79	20	77	18	45	22	13	1.83
1835159--1835225	22	3.0	22	88	4	98	17	44	23	13	1.85
1835164--1835206	12	3.8	12	81	12	63	18	46	23	11	1.82
1842385--1842468	9	8.8	9	71	12	51	17	26	26	29	1.98
1842385--1842423	21	1.9	21	89	5	62	17	25	23	33	1.96
1842406--1842477	19	3.8	19	82	10	85	16	29	27	26	1.97
1842471--1842523	5	9.8	5	76	15	52	18	50	22	7	1.72
1842470--1842530	17	3.3	17	79	20	77	18	47	22	11	1.80
1842471--1842537	22	3.0	22	93	4	107	17	46	23	11	1.82
1844065--1844153	7	12.6	7	75	17	78	68	1	5	24	1.18
1844108--1844153	4	11.8	4	82	13	60	73	0	0	26	0.83
1844102--1844151	24	2.1	24	88	7	75	74	0	0	26	0.83
1845229--1845276	3	16.7	3	91	4	73	70	2	0	27	0.98
1845300--1845631	37	8.4	43	73	17	162	46	6	3	44	1.45
1845342--1845433	30	3.0	30	92	7	141	47	5	3	43	1.42
1845440--1845617	37	4.8	36	86	9	252	46	5	3	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1845440--1845631	74	2.6	74	89	6	289	45	5	4	44	1.46
1845440--1845656	74	2.9	73	85	7	258	45	6	4	43	1.51
1845438--1845656	111	2.0	110	85	7	298	45	7	4	42	1.52
1846227--1847183	84	11.4	84	80	4	986	25	19	24	30	1.98
1846224--1847183	168	5.7	167	82	2	1131	25	19	24	30	1.98
1848313--1848569	95	2.7	95	86	4	335	32	17	15	34	1.91
1851423--1851523	39	2.6	39	91	0	157	24	31	10	32	1.90
1852441--1852582	15	8.8	15	67	21	65	71	0	5	21	1.11
1852526--1852578	20	2.7	20	85	2	54	75	0	3	20	0.96
1853670--1853713	16	2.8	16	82	0	52	68	0	4	27	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13