genome.fa.s7884.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007884.1 Hibiscus syriacus cultivar Beakdansim tig00110264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2814991

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1544 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549584--1549659	36	2.1	36	87	0	107	23	19	15	40	1.90
1549859--1550489	105	6.0	105	90	2	914	34	26	17	22	1.96
1551032--1551136	37	2.8	37	83	0	129	41	14	13	30	1.84
1551492--1551534	18	2.5	17	85	7	61	25	4	2	67	1.22
1551476--1551603	58	2.3	55	80	11	136	32	3	2	61	1.24
1557005--1557142	68	2.1	68	97	2	262	36	7	16	39	1.76
1563063--1563096	3	11.3	3	87	0	50	26	0	5	67	1.13
1563392--1563433	21	2.0	22	90	4	68	21	7	0	71	1.09
1566745--1567359	308	2.0	309	91	2	1006	40	8	13	37	1.75
1576824--1576852	12	2.3	13	94	5	51	51	17	0	31	1.45
1582537--1582659	51	2.4	51	87	2	176	17	34	28	20	1.95
1586482--1586510	3	9.7	3	100	0	58	0	34	31	34	1.58
1587535--1587570	7	5.1	7	93	0	63	44	0	25	30	1.54
1587666--1587690	12	2.1	12	100	0	50	32	16	16	36	1.90
1588421--1588484	21	3.0	21	86	4	92	28	23	25	23	2.00
1588757--1588785	14	2.0	15	93	6	51	13	13	13	58	1.63
1590961--1591181	110	2.0	111	94	0	390	44	11	8	35	1.70
1591426--1591527	51	2.0	51	86	3	143	18	30	34	16	1.93
1591545--1591607	29	2.1	29	91	2	99	31	12	26	28	1.93
1598563--1598611	16	3.0	17	85	8	66	26	18	16	38	1.91
1598636--1598668	17	2.0	17	88	5	50	33	18	18	30	1.94
1600721--1600878	21	7.8	20	72	7	86	38	25	17	18	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1600845--1601038	20	9.6	20	81	5	221	35	25	19	19	1.95
1600845--1601038	60	3.2	60	83	0	253	35	25	19	19	1.95
1601420--1601490	33	2.2	33	89	0	106	11	23	16	47	1.79
1601570--1601675	21	5.6	20	70	16	91	45	18	25	10	1.81
1601568--1601646	21	3.8	21	79	12	92	45	16	26	11	1.81
1601563--1601679	41	3.1	38	79	14	136	46	17	26	10	1.80
1601633--1601686	14	3.5	14	73	22	54	42	24	25	7	1.80
1601622--1601691	33	2.1	33	97	0	131	47	20	25	7	1.75
1601628--1601702	33	2.3	33	92	0	123	46	24	22	6	1.75
1601698--1601795	19	5.7	19	70	22	81	10	24	22	42	1.84
1601720--1601809	14	5.7	14	74	23	81	8	25	23	42	1.83
1601703--1601817	33	3.5	33	95	0	212	9	24	20	45	1.81
1603516--1603988	93	5.1	93	98	0	921	22	12	19	45	1.83
1603516--1603988	185	2.5	186	98	0	921	22	12	19	45	1.83
1604032--1604160	19	7.3	19	75	17	125	45	28	17	8	1.77
1604068--1604160	33	2.8	32	91	4	150	46	27	18	7	1.76
1604032--1604160	52	2.5	52	74	14	140	45	28	17	8	1.77
1604156--1604289	19	7.6	19	76	16	128	11	19	23	46	1.82
1604178--1604234	14	3.7	14	79	20	69	10	21	21	47	1.80
1604161--1604252	33	2.8	33	95	1	168	10	20	20	47	1.80
1604178--1604271	51	1.9	47	85	8	125	9	20	23	46	1.79
1606181--1606216	14	2.6	14	95	0	63	33	0	22	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1606323--1606420	19	5.4	19	84	13	143	45	17	22	14	1.84
1606323--1606439	53	2.2	53	98	1	227	44	17	23	13	1.85
1608755--1608779	12	2.1	12	100	0	50	0	28	0	72	0.86
1608953--1608999	24	2.0	24	87	8	69	38	21	14	25	1.92
1609682--1609931	20	12.5	20	87	1	268	19	18	24	37	1.94
1609918--1610000	21	4.0	21	73	6	78	25	16	24	33	1.96
1609898--1609996	42	2.4	43	77	11	100	21	18	23	37	1.94
1613968--1614021	26	2.1	26	96	0	99	44	9	3	42	1.54
1618820--1618869	3	17.0	3	87	4	75	36	2	0	62	1.07
1620232--1620286	21	2.5	22	82	5	67	29	1	5	63	1.27
1624702--1624794	21	4.6	20	77	4	87	39	18	23	18	1.92
1624719--1624794	21	3.7	21	80	3	100	40	18	25	15	1.90
1624702--1624794	41	2.3	41	98	0	177	39	18	23	18	1.92
1624780--1624857	41	1.9	41	83	0	102	41	21	15	21	1.90
1624825--1624877	20	2.7	20	93	0	88	28	28	18	24	1.98
1625065--1625108	22	2.0	22	95	0	79	20	45	15	18	1.85
1625370--1625407	20	1.9	20	88	0	58	13	15	21	50	1.78
1626707--1626751	18	2.5	18	88	0	72	26	44	15	13	1.83
1627233--1627299	20	3.4	20	81	2	73	38	23	22	14	1.92
1627288--1627345	14	3.9	14	79	16	71	48	24	17	10	1.78
1627272--1627362	32	2.8	33	94	3	166	47	21	18	12	1.81
1627379--1627436	14	3.9	14	77	16	62	10	15	24	50	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627374--1627452	32	2.4	33	89	2	124	11	17	22	48	1.79
1627437--1627491	20	2.8	19	89	5	83	16	25	23	34	1.95
1629717--1629896	19	9.8	19	73	17	112	45	21	21	12	1.84
1629742--1629840	33	3.0	33	84	1	126	40	25	22	12	1.88
1629812--1629901	19	4.7	19	91	2	144	46	21	20	12	1.82
1629812--1629901	39	2.3	38	92	1	144	46	21	20	12	1.82
1629897--1629963	19	3.5	19	85	2	89	10	16	25	47	1.78
1630483--1630576	20	4.7	20	79	7	82	25	18	24	31	1.97
1630565--1630657	20	4.5	21	78	4	100	17	24	18	39	1.91
1630504--1630638	41	3.3	41	83	4	139	19	21	21	37	1.94
1630565--1630657	41	2.3	41	100	0	186	17	24	18	39	1.91
1633738--1633794	24	2.4	23	80	5	69	19	12	24	43	1.85
1633781--1633863	34	2.4	34	84	6	96	24	13	16	45	1.83
1633798--1633865	34	2.0	34	88	5	102	22	14	17	45	1.85
1633803--1633876	34	2.2	34	82	4	87	21	16	16	45	1.84
1633816--1633898	34	2.4	34	78	7	87	20	16	18	44	1.87
1634562--1634640	12	6.6	12	75	5	70	41	15	13	29	1.85
1634571--1634643	12	6.1	12	76	6	76	41	16	16	26	1.89
1644017--1644140	59	2.1	59	81	11	139	32	14	8	45	1.74
1646311--1646364	20	2.7	19	75	8	63	33	31	18	16	1.93
1646351--1646483	20	6.5	20	73	10	90	36	23	18	21	1.95
1646351--1646524	20	8.5	20	71	10	84	36	23	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1646475--1646605	41	3.2	40	89	2	163	36	22	19	21	1.95
1646475--1646607	20	6.6	20	78	6	142	36	23	19	21	1.95
1647165--1647243	20	3.9	21	83	5	85	51	16	18	12	1.75
1649050--1649428	94	4.1	94	94	1	638	21	12	18	47	1.81
1649516--1649598	19	4.8	17	73	16	64	46	24	20	8	1.78
1649531--1649593	33	1.9	33	86	0	90	47	23	20	7	1.76
1649643--1649749	20	5.3	20	87	0	151	20	17	20	41	1.91
1650233--1650337	21	5.0	21	74	3	95	21	36	19	22	1.95
1650230--1650340	42	2.6	42	78	5	118	21	36	18	22	1.95
1651695--1651730	14	2.6	14	90	0	54	30	0	22	47	1.52
1651836--1651907	33	2.1	34	94	2	128	44	19	23	12	1.85
1651845--1651912	19	3.8	19	72	21	74	45	19	22	13	1.84
1651925--1652017	33	2.8	34	86	3	125	13	23	21	40	1.89
1651989--1652073	20	4.2	20	87	3	127	17	22	24	35	1.95
1654501--1654554	24	2.2	24	93	0	90	40	20	18	20	1.91
1654501--1654568	24	2.8	24	84	0	64	38	20	17	23	1.93
1655405--1655988	20	28.9	20	69	15	142	23	19	23	34	1.96
1655415--1655988	41	14.2	40	73	13	222	22	18	23	35	1.96
1655592--1655644	21	2.5	21	84	0	70	33	18	26	20	1.96
1655716--1655927	41	5.2	41	90	1	302	21	17	22	38	1.93
1655955--1656091	20	6.7	21	68	12	61	19	19	24	36	1.95
1656038--1656091	20	2.7	19	75	8	63	16	18	31	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1656079--1656131	19	2.8	19	97	0	97	13	16	18	50	1.77
1668799--1668843	16	3.0	15	87	6	65	28	2	2	66	1.15
1671318--1671356	13	3.0	13	80	0	51	64	15	5	15	1.46
1671318--1671378	26	2.3	26	83	5	70	67	11	3	18	1.35
1673668--1673705	20	1.9	20	88	0	58	47	0	31	21	1.51
1674777--1674824	23	2.1	23	84	7	62	62	16	6	14	1.51
1675007--1675099	24	3.9	24	80	5	116	56	15	12	15	1.67
1674999--1675097	48	2.1	48	94	0	171	55	16	13	15	1.69
1675055--1675105	14	3.9	14	75	19	56	58	13	11	15	1.63
1675435--1675534	52	1.9	52	87	4	148	19	32	31	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13