genome.fa.s7884.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007884.1 Hibiscus syriacus cultivar Beakdansim tig00110264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2814991

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1544 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870625--870707	35	2.3	36	82	10	100	38	10	18	32	1.85
870750--870816	28	2.4	28	92	2	107	41	13	8	35	1.76
870690--870887	88	2.2	88	85	6	254	42	14	11	31	1.82
870774--870933	64	2.5	63	79	12	184	44	12	11	31	1.78
871088--871314	67	3.4	67	86	4	266	44	11	12	30	1.79
871177--871297	37	3.5	36	70	23	114	44	9	13	32	1.76
871209--871408	29	6.8	28	74	15	140	47	14	11	27	1.78
871159--871314	67	2.3	67	94	0	267	45	10	12	30	1.77
871751--872354	273	2.2	273	99	0	1190	39	12	17	31	1.86
872379--872498	35	3.3	35	77	11	125	36	11	16	35	1.85
872624--872693	36	2.0	34	83	5	86	41	10	15	32	1.81
872443--872833	196	2.0	197	89	4	612	41	11	15	31	1.83
874320--874370	21	2.3	22	80	10	59	3	27	3	64	1.28
875027--875097	20	3.0	24	69	22	78	40	11	23	23	1.87
875014--875088	20	3.5	20	70	20	62	37	10	25	26	1.89
875024--875103	26	3.3	26	68	20	82	42	10	23	23	1.84
875012--875105	46	2.1	45	91	2	152	38	9	25	26	1.87
876947--877362	210	2.0	210	85	0	564	24	22	21	31	1.98
877540--877601	32	2.0	32	96	3	117	61	9	14	14	1.57
881029--881077	25	2.0	25	100	0	98	24	16	22	36	1.94
881150--881202	14	3.9	14	87	9	74	66	0	0	33	0.92
881150--881208	3	20.0	3	83	10	77	66	1	0	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888701--888741	21	2.0	21	85	0	55	26	0	9	63	1.25
890137--890171	18	2.0	18	88	5	54	34	5	11	48	1.63
892846--892965	64	1.9	64	92	0	204	33	23	10	32	1.89
899881--899915	12	2.8	13	87	12	56	57	0	0	42	0.99
901379--901485	3	35.7	3	92	0	178	63	0	2	32	1.15
901804--902673	113	7.7	113	96	0	1564	28	18	14	38	1.90
903344--903706	133	2.7	133	98	0	690	38	22	13	25	1.91
903617--903955	50	6.8	50	95	0	606	38	22	13	25	1.91
904728--904772	18	2.6	17	89	6	65	55	6	6	31	1.52
905113--905150	12	3.3	12	85	10	53	5	13	2	78	1.02
916498--916532	12	2.9	12	91	8	54	57	0	0	42	0.99
917996--918108	3	37.7	3	92	0	181	61	0	3	34	1.13
919164--919213	26	1.9	26	91	0	82	16	38	2	44	1.59
919649--919807	35	4.5	35	79	6	178	21	22	21	35	1.96
919651--919807	70	2.2	70	89	4	237	21	22	21	34	1.97
927401--927463	8	7.5	8	75	13	56	23	25	33	17	1.96
933609--933661	24	2.2	24	96	0	97	30	30	24	15	1.95
936517--936555	18	2.0	18	85	14	51	58	0	0	41	0.98
937403--937460	31	1.9	30	86	6	82	39	10	6	43	1.66
938347--938405	5	11.8	5	96	0	109	1	40	38	18	1.61
938403--938535	6	22.2	6	96	0	239	2	16	49	31	1.58
938810--938864	22	2.5	22	75	0	56	29	9	23	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944399--944457	5	11.8	5	96	0	91	5	40	38	15	1.69
944455--944521	6	11.2	6	96	0	125	1	16	49	32	1.55
944796--944850	22	2.5	22	75	0	56	29	9	23	38	1.85
949771--949802	2	16.0	2	100	0	64	50	0	0	50	1.00
960452--960583	65	2.0	64	82	1	156	34	11	16	37	1.85
963394--963418	12	2.1	12	100	0	50	36	0	24	40	1.55
963726--963795	35	2.0	36	97	2	133	18	30	31	20	1.96
964361--964531	31	5.5	31	90	0	270	20	18	20	40	1.91
965162--965195	14	2.4	14	90	0	50	23	14	20	41	1.89
966832--966857	2	13.0	2	100	0	52	50	0	0	50	1.00
967833--967857	12	2.1	12	100	0	50	36	0	16	48	1.46
968043--968076	12	2.8	12	100	0	68	44	0	32	23	1.54
968132--968202	35	2.0	36	91	8	119	16	32	29	21	1.95
968766--968952	31	6.0	31	97	1	340	19	19	22	38	1.93
969567--969600	14	2.4	14	95	0	59	20	14	20	44	1.87
970144--970192	26	2.0	26	88	8	75	34	2	2	61	1.19
970125--970210	29	3.1	28	79	12	88	38	2	1	58	1.19
970321--970387	31	2.2	31	94	0	116	47	8	10	32	1.69
971506--971539	12	2.8	12	90	0	50	55	29	0	14	1.40
973979--974014	18	2.0	18	94	0	63	58	25	0	16	1.38
974351--974407	20	2.8	20	89	0	87	19	21	19	40	1.92
975891--975963	21	3.5	21	84	0	101	19	20	38	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
975891--975971	42	1.9	42	94	0	144	20	19	38	20	1.94
976354--976403	21	2.4	21	82	0	64	34	32	14	20	1.92
976306--976403	42	2.3	41	74	8	99	30	34	14	20	1.92
978430--978482	20	2.7	20	85	8	72	20	18	22	37	1.94
979223--979269	20	2.4	19	85	3	58	59	0	0	40	0.97
984149--984225	24	3.6	22	75	20	67	29	19	25	24	1.98
985710--985770	23	2.7	23	86	0	77	18	24	26	31	1.97
992468--993139	336	2.0	336	99	0	1317	36	14	12	36	1.84
1007100--1007165	4	16.8	4	72	20	50	21	1	1	75	0.96
1007087--1007181	19	4.9	21	68	19	71	22	1	1	75	0.92
1007084--1007172	12	7.6	12	78	15	73	20	1	1	77	0.90
1007088--1007178	17	5.6	17	72	23	65	21	1	1	75	0.93
1007094--1007178	9	9.2	9	75	17	77	22	1	1	75	0.94
1007087--1007181	14	6.1	16	67	22	60	22	1	1	75	0.92
1012998--1013041	21	2.1	21	86	0	61	34	15	40	9	1.79
1018394--1018464	33	2.2	33	89	0	106	11	23	16	47	1.79
1018542--1018620	21	3.8	21	79	12	92	45	16	26	11	1.81
1018543--1018620	41	1.9	41	94	0	138	44	16	26	11	1.82
1018607--1018660	14	3.5	14	73	22	54	42	24	24	9	1.83
1018597--1018661	33	2.0	33	96	0	121	46	21	23	9	1.80
1018602--1018676	33	2.3	33	90	0	114	46	24	21	8	1.77
1018672--1018769	19	5.7	19	70	22	81	10	24	22	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1018694--1018783	14	5.7	14	74	23	81	8	25	23	42	1.83
1018677--1018791	33	3.5	33	95	0	212	9	24	20	45	1.81
1020488--1021147	93	7.1	93	99	0	1293	22	12	19	46	1.83
1021191--1021319	19	7.3	19	74	17	116	46	28	16	8	1.76
1021227--1021319	33	2.8	32	90	4	141	47	27	17	7	1.74
1021315--1021449	19	7.6	19	75	16	128	11	19	23	45	1.82
1021337--1021393	14	3.7	14	77	20	60	10	21	22	45	1.82
1021320--1021412	33	2.8	33	95	0	168	10	20	21	47	1.80
1023374--1023409	14	2.6	14	95	0	63	33	0	22	44	1.53
1023516--1023613	19	5.4	19	84	13	143	45	17	22	14	1.84
1023516--1023632	53	2.2	53	98	1	227	44	17	23	13	1.85
1025951--1025975	12	2.1	12	100	0	50	0	28	0	72	0.86
1026150--1026196	24	2.0	24	87	8	69	38	21	14	25	1.92
1026879--1027128	20	12.5	20	87	1	268	19	18	24	37	1.94
1027115--1027197	21	4.0	21	73	6	78	25	16	24	33	1.96
1027095--1027193	42	2.4	43	77	11	100	21	18	23	37	1.94
1027855--1027894	21	2.0	21	90	5	64	42	0	17	40	1.49
1027873--1027925	26	2.0	26	100	0	106	41	3	15	39	1.65
1031459--1031503	21	2.1	21	87	0	63	31	28	24	15	1.96
1038508--1038547	21	1.9	21	89	0	62	25	40	25	10	1.86
1045119--1045269	64	2.3	64	80	9	173	34	18	17	29	1.94
1045924--1046018	31	3.1	31	76	3	102	27	17	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050546--1050585	21	1.9	21	94	0	71	40	12	2	45	1.56
1056258--1056296	18	2.2	18	95	4	71	64	2	0	33	1.08
1056753--1056809	25	2.3	24	78	21	64	38	1	5	54	1.33
1059047--1059120	30	2.4	30	81	2	94	32	13	25	28	1.94
1061612--1061652	20	2.0	20	100	0	82	46	9	24	19	1.80
1066286--1066330	17	2.5	20	75	24	62	51	4	0	44	1.21
1066289--1066325	17	2.2	16	95	4	65	51	5	0	43	1.24
1074757--1074790	3	11.0	3	93	6	59	32	0	2	64	1.08
1075731--1075788	20	3.0	20	84	2	73	36	12	24	27	1.91
1081570--1081681	23	4.8	24	78	8	115	21	24	24	30	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13