genome.fa.s7884.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007884.1 Hibiscus syriacus cultivar Beakdansim tig00110264_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2814991

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1544 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478090--478174	14	5.4	14	70	24	62	8	24	22	44	1.80
478077--478199	33	3.7	33	95	1	210	11	22	21	43	1.84
480233--480299	21	3.2	21	66	6	55	23	35	20	19	1.95
480181--480299	42	2.8	42	76	12	102	23	36	17	22	1.95
481777--481878	19	5.4	19	96	0	177	48	16	19	15	1.82
481889--482085	19	10.8	19	79	11	234	16	19	16	47	1.83
481889--482138	52	4.7	52	81	6	275	16	20	17	44	1.86
482090--482144	20	2.8	20	91	0	92	23	23	21	30	1.99
483744--483797	24	2.2	24	93	0	90	40	20	18	20	1.91
484655--484919	20	13.2	19	80	9	190	21	18	22	38	1.94
484649--484900	40	6.3	40	86	2	301	20	18	22	38	1.93
484655--484919	60	4.4	60	80	6	230	21	18	22	38	1.94
484931--484976	20	2.3	20	81	7	58	15	19	21	43	1.87
486565--486610	20	2.3	20	96	0	83	50	23	8	17	1.74
487162--487215	20	2.8	20	88	2	83	9	18	22	50	1.75
488745--488819	39	1.9	39	94	0	132	21	45	6	26	1.76
489339--489454	21	5.5	21	78	4	117	20	35	18	25	1.95
489339--489454	42	2.8	41	81	5	142	20	35	18	25	1.95
490875--490911	14	2.6	14	100	0	74	29	0	21	48	1.50
490782--490974	78	2.5	77	90	6	304	28	2	17	51	1.56
491280--491391	19	5.7	19	77	10	84	31	10	23	34	1.89
491280--491470	20	9.6	20	72	12	96	27	13	25	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491324--491430	40	2.7	41	82	8	123	26	13	23	37	1.91
491280--491470	60	3.2	58	76	10	170	27	13	25	34	1.93
494437--494513	37	2.1	37	85	4	102	48	1	3	46	1.28
494654--494696	20	2.3	18	80	11	50	20	25	9	44	1.81
495495--495535	5	8.2	5	88	0	64	41	19	0	39	1.52
499853--499900	23	2.1	23	96	0	87	25	14	18	41	1.88
502457--502530	29	2.6	28	81	10	78	62	4	4	29	1.32
505111--506317	174	6.9	173	81	3	1249	31	15	25	27	1.96
509778--510820	183	5.7	183	90	1	1576	42	14	16	25	1.86
509780--510820	365	2.8	364	90	2	1660	42	14	16	25	1.86
510875--510929	21	2.6	21	97	0	101	45	21	14	18	1.85
513808--513863	16	3.2	18	82	12	71	30	1	12	55	1.47
515007--515077	18	3.9	18	92	0	106	29	30	19	19	1.97
515007--515077	36	2.0	36	94	0	124	29	30	19	19	1.97
517777--517836	2	30.5	2	96	3	113	50	0	0	50	1.00
519065--519165	18	6.0	18	81	15	126	23	31	26	17	1.97
523989--524151	87	1.9	87	93	0	281	34	15	9	40	1.80
524073--524117	23	2.0	23	90	0	72	40	20	6	33	1.78
524969--525069	50	2.0	50	92	0	166	26	23	17	31	1.97
525999--526062	31	2.1	30	82	11	76	51	1	0	46	1.10
526813--527004	39	4.8	38	78	8	188	18	41	13	26	1.87
526819--527004	80	2.3	80	84	3	250	17	43	12	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527199--527240	18	2.3	18	87	0	57	71	0	28	0	0.86
527199--527282	24	3.5	24	72	18	75	70	0	29	0	0.88
527207--527262	29	1.9	29	82	7	69	73	0	26	0	0.84
527243--527283	20	2.0	20	100	0	82	68	0	31	0	0.90
527201--527300	48	2.1	48	83	14	127	71	0	29	0	0.87
527243--527293	20	2.5	20	90	6	68	68	0	31	0	0.90
528876--528920	23	1.9	24	86	13	67	24	17	22	35	1.95
530802--530843	19	2.2	19	83	8	50	21	11	16	50	1.77
531972--532109	62	2.2	64	82	7	158	31	14	23	29	1.94
534204--534236	13	2.5	13	90	9	50	48	6	9	36	1.60
534742--534809	21	3.0	23	67	16	61	27	17	22	32	1.96
534738--534827	44	2.1	43	87	2	126	30	21	20	28	1.98
540427--540581	64	2.4	63	82	6	170	32	14	20	31	1.93
541964--542004	16	2.5	16	88	11	57	53	2	0	43	1.13
543888--543920	4	8.8	4	87	12	52	54	21	0	24	1.45
551120--551167	20	2.5	20	83	10	55	31	12	6	50	1.65
551145--551190	23	2.0	23	83	12	58	45	13	4	36	1.63
553002--553056	26	2.1	27	86	3	76	0	30	0	69	0.89
553002--553070	27	2.6	27	80	17	74	0	31	0	68	0.90
554797--554855	28	2.1	29	81	15	70	27	5	8	59	1.48
554804--554867	29	2.2	29	83	8	76	31	6	7	54	1.54
559684--559771	24	3.7	24	80	6	97	48	17	13	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559689--559748	12	5.0	12	75	15	61	50	16	15	18	1.79
559681--559785	48	2.2	47	81	8	122	50	16	14	19	1.78
559703--559785	24	3.5	24	75	6	62	46	16	15	20	1.83
564821--564868	1	48.0	1	78	0	51	89	8	0	2	0.56
564824--564867	6	7.8	6	85	12	58	88	9	0	2	0.59
564821--564866	16	2.9	15	87	9	65	89	8	0	2	0.57
564821--564868	22	2.2	21	96	3	87	89	8	0	2	0.56
564858--565382	263	2.0	266	95	1	948	38	12	18	31	1.87
567061--567161	42	2.4	42	86	0	130	24	13	23	37	1.92
567061--567183	42	2.9	42	81	4	124	25	17	22	34	1.96
585513--585719	113	1.9	112	87	5	312	30	14	18	36	1.90
585970--586065	14	6.9	14	72	21	58	47	6	2	43	1.40
585937--586064	35	3.7	35	91	5	201	50	3	3	42	1.36
586677--586756	35	2.4	34	83	8	101	37	0	1	61	1.04
586644--586751	35	3.1	33	80	11	94	34	0	3	62	1.13
588478--588525	21	2.3	21	85	0	60	25	39	12	22	1.89
588529--588618	21	4.3	21	91	5	121	18	36	25	18	1.94
591369--591395	13	2.1	13	100	0	54	44	0	0	55	0.99
592203--592236	13	2.6	13	95	0	59	26	23	44	5	1.76
596633--596708	31	2.5	31	82	8	109	48	11	9	30	1.71
597502--597587	28	3.1	27	83	3	100	63	12	8	15	1.50
597526--597587	14	4.4	14	87	0	88	67	12	4	14	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598751--598836	23	3.7	23	76	0	91	18	22	23	36	1.95
599003--599047	2	22.5	2	90	0	72	0	4	48	46	1.22
603043--603105	20	3.2	20	79	2	74	41	19	15	23	1.90
604074--604159	23	3.7	23	80	0	91	18	20	26	33	1.96
604058--604154	46	2.1	46	88	0	140	17	22	24	35	1.95
606069--606149	2	42.0	2	78	7	69	40	2	1	55	1.21
607861--607894	10	3.4	10	87	0	50	20	5	0	73	1.04
617908--617941	10	3.0	12	83	16	54	82	8	0	8	0.85
617912--617939	10	2.8	10	100	0	56	85	7	0	7	0.73
618135--618594	105	4.4	105	99	0	911	34	25	18	21	1.96
620339--620441	48	2.2	44	81	14	111	33	4	0	61	1.24
620809--620865	16	3.5	17	76	11	57	21	0	7	71	1.08
622164--622198	18	1.9	18	88	0	52	57	20	14	8	1.63
622029--622259	107	2.2	107	95	0	435	31	13	15	38	1.87
625426--625670	35	7.0	35	83	1	303	37	18	20	23	1.94
626776--626818	16	2.8	16	86	6	63	72	2	0	25	0.97
627905--628505	182	3.3	183	89	3	915	43	13	15	27	1.84
630492--630545	24	2.4	23	85	14	69	48	0	5	46	1.25
630531--630560	12	2.5	12	100	0	60	53	0	0	46	1.00
630786--630821	18	2.1	17	89	5	54	33	8	52	5	1.55
632846--633088	66	3.7	66	95	0	432	32	4	23	39	1.76
633039--633176	48	2.9	48	95	1	242	36	1	26	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633703--635065	201	6.8	200	84	3	1725	38	14	14	32	1.87
635371--635413	15	2.6	16	82	14	52	27	37	2	32	1.70
638364--638394	3	10.3	3	92	0	53	64	0	3	32	1.09
638363--638392	15	2.0	15	100	0	60	60	0	6	33	1.23
643878--643905	14	2.0	14	100	0	56	21	7	21	50	1.72
647413--647458	2	23.0	2	100	0	92	50	0	0	50	1.00
647749--647820	30	2.4	30	86	2	92	31	29	20	18	1.96
647806--647870	31	2.1	31	97	0	121	32	27	21	18	1.97
648866--649006	64	2.2	63	82	7	169	25	24	17	32	1.97
649745--649790	23	1.9	24	82	8	58	19	6	26	47	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13