genome.fa.s7931.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007931.1 Hibiscus syriacus cultivar Beakdansim tig00110339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2341804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  1  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312--383	23	3.1	23	84	4	92	19	22	26	31	1.97
377--421	21	2.2	21	84	11	58	24	13	26	35	1.92
1024--1675	201	3.3	201	84	3	832	29	21	18	31	1.97
7354--7722	54	6.9	54	88	1	544	31	20	18	29	1.96
8043--8113	22	3.5	22	81	9	71	29	22	16	30	1.96
17231--17295	3	22.7	3	78	9	73	63	0	1	35	1.04
17242--17287	17	2.7	17	87	12	76	60	0	0	39	0.97
17226--17290	29	2.2	28	86	8	85	58	1	1	38	1.17
17414--17835	123	3.5	121	87	3	564	25	18	16	38	1.92
21208--21268	22	2.7	23	82	14	74	21	24	34	19	1.96
21208--21270	21	2.9	21	86	11	74	20	25	33	20	1.97
27023--27447	123	3.5	123	91	1	660	25	20	15	38	1.92
29813--29864	9	5.5	10	80	11	65	0	17	1	80	0.80
29826--29866	6	7.2	6	79	20	52	0	14	0	85	0.60
29810--29869	15	4.3	13	76	21	59	0	18	1	80	0.80
29813--29867	19	3.0	18	82	15	60	0	16	1	81	0.77
29819--29869	22	2.3	22	83	12	68	0	15	1	82	0.76
32161--32215	26	2.1	26	86	0	74	52	10	18	18	1.73
32208--32256	26	1.9	25	87	4	71	65	6	10	18	1.43
32208--32295	20	4.5	19	75	8	61	62	9	11	17	1.53
32245--32298	19	2.8	19	81	10	65	59	12	12	14	1.62
34194--34562	20	18.5	20	84	4	449	34	26	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35466--35490	12	2.1	12	100	0	50	72	0	28	0	0.86
37772--38092	19	18.4	19	78	18	369	47	18	20	13	1.83
37772--38073	33	8.8	33	84	12	243	47	18	20	13	1.83
38000--38054	14	3.6	14	78	21	65	49	20	20	10	1.78
37800--38114	52	6.0	52	83	11	412	46	17	21	14	1.83
38121--38222	19	5.6	19	85	12	151	14	23	17	44	1.86
38329--38365	14	2.6	14	91	0	65	45	21	0	32	1.52
40346--40402	14	3.7	14	77	20	60	45	22	21	10	1.82
40327--40419	33	2.8	33	95	0	168	47	21	20	10	1.80
40290--40424	19	7.6	19	76	16	128	45	23	19	11	1.82
40420--40548	19	7.3	19	75	17	125	8	17	28	45	1.77
40420--40511	33	2.8	33	93	3	150	7	18	28	45	1.76
40580--41046	93	5.0	93	99	0	918	46	19	12	21	1.83
40580--41046	185	2.5	186	99	0	918	46	19	12	21	1.83
42752--42841	14	5.7	14	74	23	81	42	23	25	8	1.83
42744--42858	33	3.5	33	95	0	212	45	20	24	9	1.81
42751--42863	19	6.8	18	72	23	88	43	22	24	9	1.83
42875--42929	14	3.6	14	73	21	56	9	25	23	41	1.83
42859--42929	33	2.2	33	94	0	124	8	22	25	43	1.81
42870--42951	33	2.5	33	89	2	119	9	25	21	42	1.84
42882--42970	20	4.8	20	72	19	75	12	24	19	43	1.85
43050--43120	33	2.2	33	92	0	115	47	18	22	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43302--43356	22	2.5	22	81	0	74	20	16	40	23	1.91
43502--43694	20	9.6	20	82	5	219	19	19	25	35	1.95
43502--43694	60	3.2	60	83	0	251	19	19	25	35	1.95
43750--43802	20	2.7	20	96	0	97	22	13	26	37	1.91
45918--45961	23	2.0	22	82	13	54	4	4	22	68	1.27
46450--46520	3	24.7	3	80	8	85	63	0	1	35	1.03
54357--54382	2	13.0	2	100	0	52	0	50	0	50	1.00
54665--54694	15	1.9	16	93	6	53	23	20	23	33	1.97
56479--56513	15	2.3	15	90	0	52	20	22	8	48	1.76
62822--62862	21	1.9	22	85	5	57	36	2	9	51	1.48
65558--65642	3	28.3	3	95	0	152	34	0	1	64	1.01
67121--67163	16	2.6	17	81	7	52	25	2	4	67	1.22
67573--67937	131	2.8	130	84	4	473	33	10	15	39	1.82
70739--70783	18	2.5	17	82	10	54	62	0	4	33	1.15
70744--70784	18	2.2	19	86	4	57	65	0	4	29	1.13
70825--70880	18	3.1	17	82	12	58	50	1	3	44	1.29
71062--71108	17	2.7	18	93	3	78	29	8	29	31	1.87
71466--72069	259	2.4	250	89	5	937	40	19	12	26	1.87
75274--75300	3	9.0	3	100	0	54	66	0	0	33	0.92
76114--76157	3	14.3	3	85	4	61	38	2	0	59	1.10
79961--79985	4	6.2	4	100	0	50	72	0	0	28	0.86
82653--83065	198	2.1	200	82	2	492	33	16	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84642--84673	2	16.0	2	100	0	64	50	0	0	50	1.00
84924--84994	18	3.8	18	72	7	61	19	18	28	33	1.95
88721--88762	21	2.0	21	95	0	75	26	28	21	23	1.99
88868--88933	19	3.5	19	87	0	78	36	15	10	37	1.82
88998--89057	29	2.0	31	90	6	97	41	16	6	35	1.75
90307--90809	54	9.3	54	89	0	718	30	16	19	33	1.94
91363--91393	11	2.8	11	90	0	53	51	19	12	16	1.76
93158--93195	19	2.0	19	94	0	67	60	10	15	13	1.59
94395--94425	5	6.2	5	100	0	62	41	19	19	19	1.90
95760--95792	2	16.5	2	93	0	57	48	3	0	48	1.17
97173--97271	3	31.0	3	80	8	81	59	0	6	34	1.22
97174--97218	11	3.7	11	78	21	54	62	0	8	28	1.25
97169--97245	26	3.0	26	96	1	138	57	0	10	32	1.33
97173--97271	22	4.4	22	79	12	103	59	0	6	34	1.22
97489--97750	41	6.4	41	72	5	145	29	18	17	34	1.94
100125--100183	21	2.8	21	94	0	100	20	6	22	50	1.71
104872--104903	15	2.1	15	100	0	64	18	15	12	53	1.73
104948--105015	31	2.2	31	86	0	91	44	14	19	22	1.86
105977--106146	60	2.8	58	86	5	232	34	12	20	32	1.90
107700--107771	36	2.0	36	97	0	135	25	18	37	19	1.94
108919--108981	30	2.0	31	90	6	101	36	7	6	49	1.58
116125--116246	47	2.6	48	92	1	201	18	15	31	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118387--118446	30	2.0	31	83	9	79	25	18	5	51	1.66
118575--118650	35	2.1	35	80	11	82	43	7	19	28	1.79
121720--121789	11	5.9	11	76	20	61	41	1	0	57	1.08
121720--121778	3	20.3	3	75	19	54	38	1	0	59	1.08
123181--123245	3	21.3	3	82	17	73	29	4	0	66	1.12
123258--123333	2	38.0	2	100	0	152	50	0	0	50	1.00
123557--123614	29	2.0	28	81	15	66	51	1	1	44	1.21
129403--129483	7	10.3	7	78	21	81	80	0	17	2	0.82
129403--129483	17	5.1	15	78	12	90	80	0	17	2	0.82
129403--129477	9	8.0	9	71	14	53	80	0	17	2	0.84
134248--134302	22	2.5	22	90	0	92	34	9	14	41	1.77
134980--135770	76	10.4	76	93	0	1321	25	19	20	34	1.96
135920--135993	15	5.0	14	82	12	94	44	0	0	55	0.99
135924--135982	3	19.3	3	82	6	66	42	0	0	57	0.98
137364--137428	3	22.3	3	79	14	66	27	3	0	69	1.03
137444--137483	2	20.0	2	100	0	80	50	0	0	50	1.00
139496--139546	15	3.4	15	86	0	75	17	37	19	25	1.94
139608--139645	2	19.0	2	88	0	58	0	52	2	44	1.14
140080--140129	26	1.9	26	95	0	91	38	8	6	48	1.57
142248--142328	26	3.2	24	84	10	92	23	23	29	23	1.99
142274--142331	24	2.4	25	91	8	93	25	25	29	18	1.98
142290--142342	24	2.2	24	80	6	63	33	20	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142522--142592	31	2.3	31	90	2	108	33	25	2	38	1.71
143002--143043	21	2.0	21	85	0	57	16	21	28	33	1.95
148746--148831	2	48.0	2	72	21	57	58	0	0	41	0.98
148751--148825	25	2.9	25	70	20	64	60	0	0	40	0.97
148737--148825	36	2.5	35	90	3	133	58	0	0	41	0.98
148765--148831	21	3.1	21	78	14	66	58	0	0	41	0.98
148745--148832	23	3.9	23	75	16	85	57	0	0	42	0.98
149575--149625	24	2.1	24	85	10	68	25	27	23	23	2.00
149552--149625	26	3.0	24	80	11	78	24	24	25	25	2.00
149583--149644	24	2.5	25	78	5	72	33	24	17	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12