Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007931.1 Hibiscus syriacus cultivar Beakdansim tig00110339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2341804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1358 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2283534--2283571
10
3.2
12
82
17
53
26
0
7
65
1.19
2283539--2283576
10
3.8
10
92
0
58
23
0
7
68
1.16
2293724--2293769
23
2.0
22
84
12
58
73
2
19
4
1.10
2294899--2295126
100
2.2
104
81
7
252
37
23
16
22
1.94
2297160--2297191
2
16.0
2
100
0
64
50
0
0
50
1.00
2297323--2297389
26
2.7
23
82
17
89
26
8
0
64
1.23
2297335--2297396
26
2.4
26
97
2
117
20
11
0
67
1.21
2297329--2297404
26
3.4
22
75
19
68
25
9
0
65
1.21
2298421--2298477
24
2.4
24
75
0
60
14
12
22
50
1.75
2298728--2298795
24
2.8
24
100
0
136
8
25
23
42
1.82
2301370--2301432
20
3.0
20
68
17
56
41
23
19
15
1.90
2301359--2301441
42
2.0
42
90
0
130
38
21
19
20
1.93
2301864--2301964
42
2.4
41
76
12
107
36
18
20
23
1.95
2301893--2301972
42
1.9
42
86
0
115
42
16
18
22
1.89
2301335--2302342
261
3.9
260
89
3
1395
34
16
16
31
1.92
2304328--2304362
14
2.8
12
91
8
52
48
0
14
37
1.44
2307953--2307986
18
2.0
17
88
11
52
52
5
17
23
1.66
2308194--2308228
18
1.9
18
100
0
70
14
22
34
28
1.93
2308452--2308496
22
2.0
24
86
8
67
42
4
13
40
1.64
2316517--2316550
15
2.3
15
89
0
50
70
0
5
23
1.09
2316836--2316867
13
2.3
15
89
10
50
62
0
3
34
1.11
2316974--2317020
7
6.4
7
85
9
67
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2318324--2318371
25
1.9
25
82
0
60
18
16
25
39
1.91
2319786--2319856
3
23.7
3
76
0
70
56
32
5
5
1.46
2319786--2319854
18
3.8
18
88
0
93
56
31
5
5
1.47
2319786--2319854
9
7.7
9
83
0
84
56
31
5
5
1.47
2319878--2319938
24
2.5
24
97
0
113
62
26
8
3
1.39
2319906--2319940
18
1.9
18
94
0
61
60
25
11
2
1.45
2319963--2320012
25
2.0
26
92
4
84
54
6
0
40
1.25
2321934--2321977
20
2.3
19
85
11
63
20
25
9
45
1.80
2321940--2321977
20
1.9
20
94
0
67
21
23
10
44
1.83
2328080--2328127
23
2.0
24
92
4
80
20
25
22
31
1.98
2331923--2331960
20
1.9
19
94
5
67
28
13
5
52
1.61
2332066--2332099
13
2.6
13
90
0
59
47
0
26
26
1.53
2332575--2332608
2
17.0
2
100
0
68
50
0
0
50
1.00
2336768--2336843
36
2.1
36
97
0
143
31
10
14
43
1.79
2337263--2337292
15
2.0
15
100
0
60
13
26
46
13
1.80
2341732--2341804
36
2.0
36
97
0
137
32
10
15
41
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!