genome.fa.s7931.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007931.1 Hibiscus syriacus cultivar Beakdansim tig00110339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2341804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  10  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830369--1830419	22	2.3	22	80	16	52	50	1	0	47	1.12
1832607--1832640	12	2.8	12	91	8	52	41	26	5	26	1.78
1833204--1833268	23	2.9	23	88	2	96	26	4	40	29	1.76
1833830--1833868	21	1.9	20	89	5	60	66	20	0	12	1.24
1847595--1847633	21	1.9	20	84	5	51	10	0	20	69	1.17
1848034--1848108	20	4.1	19	70	25	70	21	36	26	16	1.94
1848223--1848262	21	1.9	21	94	0	71	22	15	32	30	1.94
1848546--1848618	35	2.1	34	85	5	94	32	15	30	21	1.94
1849691--1849728	20	2.0	20	89	5	60	47	5	13	34	1.65
1851057--1851164	20	5.8	20	65	29	69	18	34	26	20	1.96
1851058--1851163	35	3.0	35	87	4	151	18	33	26	20	1.96
1851276--1851317	21	2.0	21	95	0	75	23	21	28	26	1.99
1857826--1857904	36	2.3	35	91	6	133	37	15	1	45	1.54
1857936--1857980	24	2.0	23	91	8	74	60	2	8	28	1.39
1869616--1869650	5	6.8	5	93	6	61	57	0	42	0	0.99
1869795--1869840	24	1.9	25	82	8	60	17	2	6	73	1.14
1869859--1869919	25	2.5	24	84	10	72	14	14	13	57	1.66
1870339--1870379	21	2.0	21	95	4	75	46	0	4	48	1.23
1873686--1873779	18	5.2	18	94	0	143	30	10	11	46	1.74
1873911--1873989	41	1.9	41	89	0	122	24	10	17	48	1.78
1876285--1876323	20	2.1	19	90	9	62	23	25	15	35	1.94
1892497--1892553	19	3.0	18	82	12	69	66	1	31	0	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1892505--1892556	26	2.0	27	84	3	70	69	1	28	0	0.99
1900939--1901023	44	2.0	44	82	13	108	29	4	2	63	1.27
1900957--1901025	19	3.3	19	71	21	57	31	2	1	63	1.18
1901240--1901275	18	1.9	19	88	5	56	30	5	0	63	1.17
1901315--1901341	2	13.5	2	100	0	54	48	0	0	51	1.00
1901345--1901428	8	10.1	8	71	15	55	17	7	0	75	1.03
1901345--1901428	12	6.8	12	76	15	55	17	7	0	75	1.03
1901352--1901430	29	2.7	30	82	3	99	16	6	0	77	0.97
1901345--1901400	17	3.4	17	78	14	62	17	5	0	76	0.96
1901374--1901423	25	2.1	23	85	7	64	16	6	0	78	0.95
1905935--1905975	16	2.6	16	85	11	57	78	9	12	0	0.98
1905941--1906013	7	9.7	7	73	16	58	79	6	12	1	0.99
1906789--1906866	22	3.5	22	92	0	129	37	26	14	21	1.92
1907671--1909681	106	19.0	106	90	1	3032	34	24	17	23	1.96
1910950--1911040	19	4.6	19	70	17	60	31	4	2	61	1.28
1911363--1911431	17	4.1	16	77	7	66	14	10	0	75	1.05
1912205--1912238	2	17.0	2	100	0	68	50	0	0	50	1.00
1914658--1914770	27	4.2	27	89	0	136	38	23	15	23	1.92
1914954--1915245	78	3.7	78	81	0	332	31	18	27	23	1.97
1914955--1915245	156	1.9	156	87	0	429	31	18	26	23	1.97
1918485--1918571	44	2.0	44	95	0	156	45	21	5	26	1.74
1920582--1921124	45	12.1	45	90	0	789	45	11	20	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1924289--1924348	24	2.5	23	75	19	61	15	13	31	40	1.85
1924394--1924452	3	19.7	3	96	0	109	66	0	1	32	1.02
1924860--1924909	20	2.5	20	96	3	91	24	10	22	44	1.83
1931690--1931724	18	2.0	18	88	5	54	22	17	25	34	1.96
1931773--1931836	21	3.2	20	70	17	60	25	18	25	31	1.98
1931761--1931853	40	2.3	40	90	0	150	23	19	23	33	1.97
1931770--1931833	19	3.3	19	69	16	58	23	17	28	31	1.97
1938654--1938698	22	2.1	22	88	12	67	66	4	0	28	1.11
1940007--1940136	9	14.7	9	79	6	131	61	0	3	34	1.17
1940007--1940136	6	22.0	6	81	6	131	61	0	3	34	1.17
1940509--1941195	122	5.7	123	86	4	879	26	19	14	39	1.91
1940509--1941195	245	2.9	244	86	5	920	26	19	14	39	1.91
1941609--1941758	22	6.8	23	90	3	206	39	12	14	34	1.83
1953921--1953959	8	4.8	8	83	3	51	56	0	2	41	1.13
1953920--1954189	148	1.8	150	87	4	404	49	7	7	35	1.59
1955789--1955888	3	33.7	3	82	9	116	61	0	1	38	1.03
1956929--1956970	18	2.3	18	76	11	50	57	11	0	30	1.35
1958068--1958349	2	143.0	2	63	21	53	47	3	4	44	1.40
1958068--1958378	15	19.9	15	66	21	54	46	2	5	45	1.40
1958099--1958157	18	3.3	18	79	11	68	45	5	1	47	1.34
1958194--1958405	83	2.6	82	82	7	252	48	1	5	43	1.37
1958555--1958628	37	2.1	36	87	5	105	40	8	10	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958736--1958816	7	11.6	7	82	0	90	44	37	2	16	1.61
1958900--1959006	22	5.1	20	80	13	101	41	7	9	42	1.65
1959017--1959107	21	4.3	20	71	16	58	37	6	7	48	1.58
1959117--1959223	31	3.4	31	71	21	94	41	3	3	51	1.38
1959123--1959330	65	3.2	64	79	13	210	44	3	3	48	1.37
1959177--1959238	14	4.4	14	75	18	56	46	6	1	45	1.38
1959256--1959542	6	45.5	6	70	20	121	48	1	2	48	1.20
1959175--1959436	31	9.2	29	72	20	107	47	2	2	47	1.30
1959060--1959354	153	2.0	146	79	10	310	43	4	3	48	1.41
1959287--1959528	49	4.9	48	73	20	175	50	0	1	47	1.17
1959285--1959523	124	1.9	125	84	10	321	49	0	1	48	1.17
1959471--1959539	28	2.4	27	86	9	93	47	1	0	50	1.09
1959290--1959534	50	5.0	50	72	21	182	49	0	1	48	1.16
1960251--1960279	11	2.6	11	100	0	58	41	44	6	6	1.58
1960297--1960338	19	2.2	19	86	0	57	45	38	4	11	1.62
1960641--1960847	102	2.0	102	92	1	346	20	8	18	52	1.71
1960844--1960915	31	2.3	31	92	0	126	15	8	23	52	1.69
1963170--1963194	11	2.3	11	100	0	50	32	12	0	56	1.36
1963990--1964039	23	2.1	24	92	3	84	48	6	0	46	1.27
1964286--1964316	16	1.9	16	93	0	53	32	19	19	29	1.96
1964310--1964362	16	3.3	16	86	0	79	39	9	26	24	1.86
1978961--1978994	14	2.3	15	90	5	52	0	2	5	91	0.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1987416--1987473	27	2.1	27	100	0	116	39	18	12	29	1.87
1988148--1988212	2	33.0	2	96	3	123	0	50	0	49	1.00
1994149--1994200	20	2.6	20	93	0	86	26	28	19	25	1.98
1994719--1994785	19	3.5	19	85	2	89	47	25	16	10	1.78
1994781--1994965	19	10.1	19	76	14	165	11	22	22	44	1.84
1994781--1994965	33	5.1	38	78	14	158	11	22	22	44	1.84
1994908--1994965	20	2.9	20	80	10	64	13	24	18	43	1.87
1997816--1997853	20	1.9	20	88	0	58	50	21	15	13	1.78
1998349--1998401	20	2.7	20	93	0	88	24	18	28	28	1.98
1998369--1998504	41	3.3	43	80	9	133	21	19	19	38	1.93
1998432--1998524	20	4.5	21	78	4	100	18	23	17	40	1.90
1998432--1998524	41	2.3	41	96	0	168	18	23	17	40	1.90
1999508--1999705	86	2.3	87	87	3	283	35	21	19	24	1.96
2002827--2002882	18	2.9	19	80	14	71	30	10	10	48	1.72
2002827--2002883	21	3.0	19	78	12	64	29	10	10	49	1.71
2003393--2003431	21	1.9	21	89	5	62	35	38	10	15	1.81
2004221--2004404	60	3.1	60	80	3	192	39	3	23	33	1.73
2007103--2007418	43	7.1	43	74	12	196	50	6	18	25	1.70
2007181--2007362	93	2.0	93	82	6	226	50	5	17	26	1.68
2010835--2010989	58	2.6	60	81	10	185	32	17	15	34	1.91
2011411--2011442	5	6.4	5	92	0	55	0	0	34	65	0.93
2032781--2032958	93	1.9	93	86	4	252	30	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2038383--2038608	103	2.2	103	96	1	418	26	14	23	36	1.93
2038617--2038702	23	3.7	23	88	0	118	22	26	25	25	2.00
2038610--2038707	23	4.3	23	85	2	110	24	23	23	28	2.00
2044344--2044561	103	2.1	103	97	0	409	26	13	22	37	1.92
2044578--2044663	23	3.7	23	92	0	127	20	26	26	25	1.99
2044571--2044668	23	4.3	23	88	2	119	23	23	24	28	2.00
2047655--2047695	20	2.0	20	85	0	55	48	2	2	46	1.28
2049978--2050104	29	4.4	29	86	4	100	40	24	5	29	1.77
2057098--2057261	29	5.8	28	82	8	165	43	22	5	28	1.75
2060952--2061029	30	2.6	30	85	0	102	25	34	7	32	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12