genome.fa.s7931.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007931.1 Hibiscus syriacus cultivar Beakdansim tig00110339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2341804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  6  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1051682--1051773	19	5.4	19	71	24	96	45	18	20	15	1.85
1051682--1051807	33	3.8	33	91	2	182	46	20	19	14	1.84
1051778--1051823	19	2.4	19	88	0	65	47	23	13	15	1.80
1051819--1051883	19	3.7	19	70	19	68	15	21	18	44	1.86
1051877--1051949	20	3.6	20	65	17	51	24	15	24	35	1.94
1053205--1053233	15	1.9	15	100	0	58	34	17	27	20	1.95
1053220--1053328	41	2.7	41	86	1	139	23	13	27	34	1.93
1053202--1053324	20	6.3	20	74	12	96	25	14	28	31	1.95
1053314--1053362	21	2.3	21	96	0	89	20	24	16	38	1.92
1053258--1053346	41	2.2	41	83	4	108	20	17	24	37	1.94
1053356--1053408	21	2.5	21	78	6	63	33	18	24	22	1.97
1060714--1060805	42	2.2	42	86	0	121	42	22	10	23	1.85
1060708--1060805	21	4.7	21	72	7	74	42	21	12	23	1.86
1075822--1075935	21	5.6	20	73	12	97	21	19	21	36	1.95
1075820--1075959	42	3.4	41	83	3	174	23	20	21	34	1.97
1075820--1075959	21	6.8	19	72	13	73	23	20	21	34	1.97
1076971--1077007	6	6.5	6	96	3	60	0	16	54	29	1.43
1077103--1077279	42	4.3	41	83	9	202	35	20	21	22	1.96
1077096--1077254	21	7.7	19	75	14	120	33	21	21	23	1.97
1080956--1080982	14	1.9	14	100	0	54	29	22	11	37	1.89
1082384--1082451	20	3.3	20	81	4	91	30	25	26	17	1.97
1082486--1082528	22	1.9	23	90	4	70	20	20	32	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082628--1082685	30	2.0	29	90	10	91	44	17	5	32	1.70
1082628--1082687	29	2.0	30	93	6	104	43	16	6	33	1.74
1085443--1085512	34	2.1	32	89	5	104	24	30	14	31	1.94
1085727--1085767	21	1.9	22	90	5	66	14	9	34	41	1.79
1085870--1085934	21	3.1	21	80	8	80	24	27	27	20	1.99
1085879--1085952	20	3.7	20	83	3	94	29	22	28	18	1.98
1085870--1085952	41	2.0	41	88	4	123	27	25	27	19	1.99
1085987--1086029	22	1.9	23	90	4	70	20	20	32	25	1.97
1086130--1086187	30	2.0	29	86	10	82	44	15	5	34	1.69
1086130--1086189	29	2.0	30	90	6	95	43	15	6	35	1.72
1091612--1091672	20	3.0	20	82	2	86	14	29	36	19	1.92
1091701--1091740	21	1.9	21	100	0	80	15	30	32	22	1.94
1091984--1092095	3	37.3	3	100	0	224	66	0	0	33	0.92
1091992--1092128	9	14.9	9	92	6	62	66	0	0	32	0.97
1092423--1092601	24	7.4	25	87	3	233	35	21	19	22	1.96
1092439--1092601	74	2.2	73	88	1	245	34	22	19	22	1.96
1093630--1093654	13	1.9	13	100	0	50	48	20	0	32	1.50
1097851--1097890	11	3.6	11	86	0	62	22	22	25	30	1.99
1097850--1097891	22	1.9	22	100	0	84	23	23	23	28	2.00
1100616--1100693	7	11.3	7	81	2	95	46	34	1	17	1.57
1100771--1100800	14	2.1	14	93	0	51	43	0	6	50	1.28
1103737--1103770	16	2.2	16	89	5	52	55	0	14	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1105711--1105818	43	2.6	40	81	7	119	28	19	28	23	1.98
1105983--1106080	40	2.4	42	84	6	121	25	18	32	23	1.97
1105746--1106098	130	2.7	131	74	9	317	26	17	28	27	1.98
1106170--1106238	35	2.0	35	91	8	115	34	10	24	30	1.89
1106200--1106427	67	3.4	65	77	13	221	41	12	16	30	1.85
1106511--1106578	33	2.1	33	91	5	111	32	22	13	32	1.92
1107536--1107583	3	15.7	3	95	4	87	35	0	0	64	0.94
1108149--1108190	17	2.4	18	80	11	52	23	4	0	71	1.05
1122858--1122896	18	2.0	20	90	9	64	66	0	10	23	1.22
1122852--1122900	19	2.4	21	83	16	68	67	0	8	24	1.18
1127135--1127189	19	2.9	18	80	20	67	1	16	3	78	0.98
1127455--1127503	19	2.4	21	83	16	68	65	0	10	24	1.23
1130236--1130662	109	3.9	108	86	2	448	21	24	20	33	1.97
1130295--1130662	108	3.4	109	88	1	501	20	23	21	33	1.97
1130295--1130662	162	2.3	164	85	4	487	20	23	21	33	1.97
1130295--1130662	54	6.8	53	86	3	441	20	23	21	33	1.97
1131953--1131981	11	2.5	12	94	5	51	0	20	0	79	0.74
1149768--1150984	290	4.1	288	74	10	872	35	14	13	36	1.86
1150651--1151351	369	1.9	372	81	4	871	36	14	12	36	1.84
1152004--1152039	16	2.3	16	85	4	56	44	16	5	33	1.71
1152344--1152388	20	2.2	20	88	0	63	62	13	2	22	1.42
1152356--1152395	20	2.0	20	95	0	71	52	15	2	30	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156221--1156343	55	2.2	55	85	0	165	48	10	17	22	1.78
1156222--1156365	55	2.6	55	83	0	162	48	9	18	23	1.77
1162835--1162877	22	2.0	22	90	0	68	37	9	13	39	1.78
1163680--1164299	136	4.6	136	90	1	901	33	16	22	26	1.96
1164234--1164527	117	2.6	111	79	9	305	42	13	19	24	1.87
1164691--1164739	7	7.4	7	88	2	59	36	2	0	61	1.08
1164695--1164747	3	16.3	3	77	14	52	35	1	0	62	1.06
1164695--1164747	7	8.2	6	87	4	52	35	1	0	62	1.06
1168995--1169034	18	2.2	18	86	0	53	60	12	0	27	1.33
1167625--1169462	721	2.5	721	83	3	2216	37	14	12	36	1.83
1167930--1169385	369	4.0	369	78	8	1118	37	14	12	36	1.83
1169311--1169609	148	2.0	148	96	1	544	39	17	7	35	1.78
1175054--1175402	39	9.0	39	90	1	497	36	16	18	28	1.93
1175436--1175631	73	2.7	70	80	13	202	42	13	14	29	1.84
1182594--1182785	36	5.1	36	65	19	115	29	15	13	41	1.85
1182517--1182811	150	2.0	148	86	5	407	29	15	13	40	1.86
1182499--1182848	77	4.7	75	83	7	396	30	14	14	40	1.86
1182521--1182848	150	2.2	147	83	8	396	30	15	14	39	1.86
1182829--1182943	39	2.9	41	87	6	173	32	19	14	33	1.92
1182827--1183080	36	6.7	39	85	7	194	28	20	16	35	1.94
1182872--1183054	36	5.0	36	91	2	231	25	22	15	36	1.93
1182829--1183112	72	3.8	73	81	5	248	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1185363--1186084	347	2.1	346	81	7	820	36	13	13	37	1.84
1190512--1190548	20	2.0	20	89	10	60	45	10	24	18	1.81
1190698--1190728	15	2.1	15	93	0	53	54	0	0	45	0.99
1190990--1191041	16	3.2	16	77	0	59	44	1	3	50	1.31
1190976--1191041	32	2.1	32	88	0	96	50	1	4	43	1.32
1192374--1192514	64	2.2	65	82	5	171	35	19	20	24	1.96
1192377--1192533	64	2.4	64	81	8	167	34	21	21	22	1.97
1192521--1192578	20	2.6	22	86	10	75	31	18	22	27	1.97
1194137--1194196	23	2.6	23	91	0	93	21	28	23	26	1.99
1195613--1195672	31	1.9	31	93	0	102	31	21	15	31	1.94
1202046--1202095	2	25.0	2	100	0	100	50	0	0	50	1.00
1204935--1204970	2	18.0	2	100	0	72	50	0	0	50	1.00
1205081--1205223	51	2.8	51	80	2	153	53	11	15	19	1.73
1206713--1207252	139	3.9	139	88	2	762	26	19	17	36	1.94
1210857--1210917	23	2.7	23	89	2	88	26	26	26	21	1.99
1212510--1212668	63	2.5	62	84	4	192	27	21	19	32	1.97
1212636--1212673	19	2.0	20	94	5	69	26	28	15	28	1.96
1216033--1216093	23	2.7	23	87	7	81	26	26	26	21	1.99
1217686--1217840	63	2.5	63	86	0	202	27	21	18	32	1.97
1217812--1217849	19	2.0	20	94	5	69	26	28	15	28	1.96
1218693--1218771	39	2.0	39	85	0	104	31	16	15	36	1.90
1218831--1218975	75	1.9	77	84	5	197	30	14	15	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1218978--1219336	39	9.3	39	90	2	517	29	18	17	34	1.94
1218778--1219338	117	4.9	117	78	7	567	29	17	17	35	1.93
1221987--1222099	43	2.7	43	80	10	133	43	7	24	23	1.81
1226909--1226950	17	2.5	17	81	14	52	45	19	0	35	1.50
1227367--1227525	18	8.8	18	95	0	273	27	34	20	16	1.95
1231555--1231589	17	2.1	17	94	0	61	22	14	11	51	1.74
1231955--1232295	43	7.9	43	87	3	445	30	18	25	25	1.98
1234306--1234330	5	5.0	5	100	0	50	0	40	0	60	0.97
1234849--1235173	42	7.9	41	83	6	331	34	18	20	26	1.96
1236425--1236620	41	4.7	41	78	5	171	36	17	13	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12