genome.fa.s7931.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007931.1 Hibiscus syriacus cultivar Beakdansim tig00110339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2341804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822208--822261	21	2.6	21	93	0	90	24	20	35	20	1.96
822341--822398	30	2.0	29	86	10	82	44	13	5	36	1.66
822341--822400	29	2.0	29	90	6	93	43	13	6	36	1.70
823673--823720	19	2.5	20	82	3	62	31	10	6	52	1.60
825008--825075	20	3.3	20	83	4	91	29	23	26	20	1.99
825096--825192	42	2.3	42	80	3	106	23	15	36	24	1.94
825139--825194	21	2.7	21	88	0	76	23	16	35	25	1.94
825273--825332	29	2.0	29	87	12	86	43	16	6	33	1.74
827663--827735	33	2.2	33	87	0	101	19	31	21	27	1.97
830695--830769	31	2.4	32	77	6	82	28	10	8	53	1.63
832004--832053	19	2.7	19	75	9	50	64	0	4	32	1.12
832017--832130	61	2.0	58	80	16	130	61	1	3	33	1.23
833133--833688	105	5.3	105	88	3	746	21	18	26	33	1.96
833857--833932	36	2.1	36	87	4	109	42	15	19	22	1.89
833832--834149	104	3.1	104	92	1	516	36	11	20	30	1.89
834052--834126	39	1.9	39	83	5	98	37	13	22	26	1.91
834273--834380	36	3.0	36	75	2	110	44	13	14	26	1.83
834220--834380	72	2.2	75	84	6	204	43	13	16	26	1.85
835536--836072	183	2.9	183	94	0	941	30	21	20	27	1.98
840042--840136	12	8.4	11	71	18	61	64	2	4	29	1.24
840493--840597	37	2.8	37	82	0	129	30	14	13	41	1.84
849471--849520	17	3.1	17	68	26	54	20	6	22	52	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849572--849602	9	3.4	9	90	0	53	9	64	12	12	1.50
857904--857935	15	2.1	15	94	0	55	6	25	15	53	1.65
862423--862509	44	2.0	44	97	0	165	50	9	2	37	1.47
863677--863712	17	2.2	16	90	5	54	63	5	0	30	1.17
864136--864237	3	34.0	3	86	3	143	39	0	0	60	0.97
865518--865551	11	3.0	11	95	4	59	26	2	0	70	1.01
865480--865551	23	3.2	23	69	20	62	25	4	2	68	1.21
874356--874412	22	2.6	22	85	0	87	36	15	10	36	1.82
875170--875373	45	4.5	45	90	1	309	27	21	19	31	1.97
875305--875447	76	1.9	74	88	2	214	26	20	19	32	1.97
875381--875494	45	2.5	45	89	2	165	28	20	20	31	1.97
875260--875570	121	2.6	121	89	1	460	27	20	18	32	1.96
875426--875644	76	2.9	76	92	1	370	27	20	19	32	1.97
875305--875664	197	1.8	197	91	0	594	27	20	18	32	1.97
875578--875664	45	1.9	45	92	0	147	29	21	17	31	1.96
875972--876006	18	1.9	18	94	0	61	40	0	0	60	0.97
876438--876480	20	2.2	20	82	0	50	58	32	4	4	1.39
876679--876705	13	2.1	13	100	0	54	7	14	55	22	1.64
877288--877321	11	3.0	11	91	4	50	32	2	0	64	1.08
877332--877371	2	20.0	2	89	0	62	55	0	0	45	0.99
878254--878279	1	26.0	1	100	0	52	0	0	0	100	0.00
891928--891952	12	2.1	12	100	0	50	36	16	8	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893200--893225	13	2.0	13	100	0	52	23	23	23	30	1.99
895487--895549	21	3.0	21	79	4	74	25	15	28	30	1.96
902498--902560	21	3.0	21	92	0	99	25	17	28	28	1.97
916912--916965	3	18.0	3	88	7	83	31	1	0	66	1.02
922392--922423	15	2.1	15	94	0	55	25	18	9	46	1.79
929762--929792	13	2.5	12	90	10	53	90	0	9	0	0.46
930784--931345	93	6.0	93	94	0	921	30	14	19	35	1.92
932144--932590	116	3.9	116	91	2	615	36	13	19	29	1.91
932825--932873	3	16.7	3	91	4	73	28	0	4	67	1.09
933300--933347	21	2.3	21	78	7	53	56	25	16	2	1.51
934270--934319	22	2.2	22	85	7	64	42	4	0	54	1.19
938905--939030	63	2.0	63	96	0	234	53	8	7	30	1.59
943622--943843	41	5.4	41	77	8	216	25	19	18	36	1.95
952097--952155	21	2.8	21	92	0	100	22	6	20	50	1.71
955647--955737	20	4.6	20	83	5	112	28	23	20	27	1.99
956396--956487	42	2.2	42	80	3	105	23	17	38	20	1.93
956974--957040	20	3.5	18	86	11	89	35	26	19	17	1.94
956985--957040	20	2.8	20	94	0	94	35	25	19	19	1.95
957083--957134	20	2.6	20	93	0	86	19	19	26	34	1.95
957267--957316	18	2.8	18	91	8	84	42	8	20	30	1.80
959042--959109	20	3.5	20	81	2	84	50	22	14	13	1.77
959494--959536	22	2.0	22	95	0	77	18	11	41	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959710--959823	20	5.8	19	86	3	129	24	22	23	28	1.99
959711--959823	39	2.8	40	85	1	147	23	23	23	29	1.99
959713--959847	20	6.8	20	79	9	116	22	22	22	31	1.98
967891--968071	63	2.8	65	80	10	190	47	7	5	39	1.56
969196--969225	12	2.6	11	90	10	51	16	0	20	63	1.31
969108--969804	327	2.1	324	82	6	836	30	3	12	52	1.57
971749--972032	60	4.8	60	89	2	446	34	13	24	27	1.93
972769--972904	63	2.2	63	82	6	161	36	17	16	29	1.92
974175--974389	60	3.6	60	85	2	288	36	12	21	29	1.90
980348--980385	18	2.1	18	100	0	76	44	15	21	18	1.86
980985--981241	60	4.3	60	82	3	311	36	10	20	31	1.87
980985--981242	120	2.1	121	87	2	360	36	10	20	31	1.87
981832--981902	27	2.6	27	95	0	124	29	21	15	33	1.94
983467--983711	60	4.1	60	85	2	321	35	12	22	29	1.90
985826--985931	27	3.9	27	77	4	97	43	12	2	41	1.57
988718--988796	38	2.1	38	80	4	88	51	2	1	44	1.23
988931--989016	38	2.3	38	89	0	127	43	25	8	23	1.81
989188--989263	38	2.0	38	87	5	109	42	19	7	30	1.80
989274--989333	25	2.4	25	91	0	93	31	8	1	58	1.38
990013--990039	7	3.9	7	100	0	54	44	55	0	0	0.99
1009329--1009396	35	1.9	35	84	3	91	32	22	16	29	1.95
1022978--1023012	10	3.4	10	92	4	52	11	28	17	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023394--1023685	97	3.0	97	90	2	469	30	23	16	30	1.96
1026245--1026287	3	14.3	3	100	0	86	0	32	0	67	0.91
1026729--1026762	17	1.9	17	88	5	50	26	0	2	70	1.01
1029962--1030002	14	2.9	14	100	0	82	41	29	21	7	1.80
1029990--1030078	20	4.4	20	78	2	99	37	22	20	20	1.95
1030083--1030170	19	4.8	19	76	16	96	45	18	21	14	1.85
1030030--1030170	53	2.7	52	86	3	174	42	19	21	16	1.89
1030180--1030274	33	2.8	33	85	3	118	13	21	22	43	1.87
1030376--1030412	14	2.6	14	86	0	56	48	21	0	29	1.50
1031792--1031849	21	2.8	21	82	7	73	20	18	39	20	1.92
1032331--1032379	20	2.5	20	86	0	71	34	24	20	20	1.96
1032412--1032494	19	4.2	20	72	13	64	14	15	26	43	1.85
1032542--1032921	94	4.1	94	91	1	602	47	17	11	22	1.80
1034412--1034467	20	2.8	20	80	20	80	39	19	25	16	1.91
1034552--1034593	21	2.0	21	95	0	75	11	14	16	57	1.66
1035139--1035331	20	9.6	20	72	6	165	20	18	23	38	1.93
1035141--1035331	40	4.7	41	90	1	278	20	17	23	38	1.93
1035141--1035373	121	1.9	121	85	5	319	20	17	23	38	1.93
1035366--1035414	21	2.3	21	78	0	53	26	16	22	34	1.95
1035580--1035622	6	7.2	6	79	10	52	48	0	0	51	1.00
1035753--1035834	21	3.7	22	72	15	71	46	0	1	52	1.08
1037752--1037799	22	2.1	23	88	3	71	22	27	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044492--1044541	22	2.2	23	89	3	75	28	26	18	28	1.98
1045957--1046015	22	2.7	22	72	15	59	55	1	0	42	1.09
1047095--1047168	21	3.5	21	72	7	60	25	21	16	36	1.94
1047158--1047269	20	5.6	20	81	4	127	37	20	19	22	1.94
1047158--1047251	41	2.3	41	87	1	127	39	19	20	21	1.93
1047868--1047989	14	7.6	14	70	24	82	9	24	22	42	1.84
1047851--1048038	33	5.5	33	92	5	277	11	23	20	44	1.83
1050124--1050190	21	3.2	21	66	6	55	23	35	20	19	1.95
1050072--1050190	42	2.8	42	81	5	107	22	36	18	22	1.95
1051540--1051575	14	2.6	14	95	0	63	30	0	25	44	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12