genome.fa.s7931.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007931.1 Hibiscus syriacus cultivar Beakdansim tig00110339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2341804

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  4  of  12  ( 1358 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
601712--601749	18	2.1	18	90	5	58	84	0	2	13	0.73
601980--602023	22	2.0	23	90	4	72	45	6	2	45	1.42
601971--602031	24	2.5	26	82	12	76	49	9	1	39	1.46
602073--602133	19	3.0	20	83	11	72	42	4	1	50	1.33
616019--616047	12	2.3	13	94	5	51	62	0	0	37	0.96
617503--617598	45	2.2	45	83	9	117	47	5	2	44	1.37
617482--617675	39	4.7	43	75	14	137	46	6	3	44	1.44
617487--617684	40	5.0	41	76	15	168	46	6	3	43	1.45
617635--617663	14	2.1	14	93	6	51	44	3	6	44	1.47
617666--617712	17	2.6	18	83	13	60	42	4	0	53	1.20
617548--617715	39	4.4	37	74	20	116	44	5	2	47	1.38
620590--620688	39	2.5	39	96	0	180	29	20	30	20	1.97
621495--621550	19	3.0	19	76	2	60	10	17	53	17	1.72
625055--625107	21	2.5	21	87	0	79	20	24	18	35	1.95
625328--625372	22	2.0	22	91	0	72	24	42	13	20	1.87
625742--625816	20	3.8	20	83	0	78	17	16	22	44	1.87
627709--627776	20	3.4	20	97	0	127	39	22	19	19	1.92
627750--627834	33	2.5	34	80	3	100	45	21	20	12	1.84
627730--627895	87	1.9	87	88	0	251	43	20	18	16	1.87
627910--627956	20	2.3	20	88	0	67	21	19	23	36	1.95
628463--628543	21	3.9	21	73	0	72	22	35	19	22	1.96
628465--628547	42	2.0	42	83	4	105	21	38	19	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629933--629968	14	2.6	14	90	0	54	30	0	22	47	1.52
630097--630169	33	2.2	33	92	2	119	46	17	23	12	1.82
630140--630179	20	2.0	20	85	9	55	55	20	12	12	1.69
630184--630279	33	2.9	34	87	3	131	13	22	21	41	1.88
630251--630339	20	4.4	20	85	2	126	19	22	24	33	1.97
632770--632823	24	2.2	24	90	0	81	40	20	16	22	1.91
633667--633720	20	2.7	20	100	0	108	25	18	25	29	1.98
633666--633733	20	3.4	20	91	0	91	25	19	25	30	1.98
633720--633792	20	3.7	20	98	0	137	21	20	19	38	1.94
633789--633834	21	2.2	21	88	0	65	41	17	23	17	1.90
634825--634879	27	2.0	27	92	0	92	23	10	18	47	1.80
638055--638144	41	2.2	41	84	6	110	73	6	5	14	1.22
638256--638280	13	1.9	13	100	0	50	72	0	8	20	1.10
638302--638337	17	2.0	17	89	10	54	72	0	2	25	0.98
640092--640352	110	2.4	109	87	4	377	23	18	22	34	1.96
641581--641636	25	2.3	24	84	12	78	5	14	1	78	1.00
648731--648773	21	2.0	21	86	0	59	67	2	4	25	1.22
649501--649809	164	1.9	166	84	4	419	49	4	11	33	1.60
650413--650469	27	2.1	27	87	9	80	28	1	70	0	0.98
650413--650469	7	8.3	7	81	9	64	28	1	70	0	0.98
654367--654443	37	2.1	37	85	4	102	48	1	3	46	1.28
654589--654626	20	1.9	20	88	0	58	21	26	10	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660334--660511	40	4.5	40	83	4	177	32	14	19	34	1.91
660414--660511	39	2.5	39	93	0	160	29	14	19	36	1.91
660631--660868	39	6.2	39	80	5	234	35	15	18	29	1.93
664782--664868	22	4.0	20	68	21	59	43	4	4	47	1.44
664830--665006	90	2.0	89	92	1	291	45	6	10	37	1.66
671617--671667	12	4.2	12	85	12	68	80	1	0	17	0.81
671617--671679	17	3.5	19	86	4	71	80	1	1	15	0.86
671623--671659	11	3.2	11	85	14	56	83	0	0	16	0.64
671626--671679	17	3.1	17	86	5	72	83	1	1	12	0.81
671617--671660	13	3.5	13	84	12	65	81	0	0	18	0.68
673948--673993	22	2.1	21	84	8	56	50	0	0	50	1.00
675153--675219	33	2.1	33	94	2	118	41	16	0	41	1.48
675141--675212	32	2.3	31	88	11	112	50	13	0	36	1.43
677761--677799	19	2.1	19	90	0	60	58	5	0	35	1.20
678366--678425	31	2.0	31	83	3	77	35	16	25	23	1.95
678206--678615	216	1.9	215	89	3	637	37	10	23	28	1.88
678396--678611	92	2.3	92	84	1	299	37	10	22	30	1.87
683235--683344	54	2.0	54	91	0	175	37	20	19	23	1.94
683860--683937	2	39.5	2	84	7	106	48	2	2	46	1.29
686021--686135	51	2.3	51	84	6	144	35	6	8	49	1.58
688026--688071	23	1.9	25	82	8	60	50	2	0	47	1.13
688019--688077	28	2.1	30	84	12	81	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
688488--688676	92	2.1	91	86	3	263	37	11	22	29	1.88
688552--688799	122	2.0	123	89	2	383	37	13	19	29	1.90
691201--691255	16	3.4	16	76	0	56	23	25	14	36	1.93
691796--691839	14	3.1	14	90	0	61	27	0	27	45	1.54
691896--691948	27	1.9	28	88	3	81	47	1	3	47	1.31
691917--691964	20	2.5	20	89	3	71	43	8	4	43	1.53
692194--693151	6	158.8	6	94	3	1633	48	33	1	16	1.55
693251--693301	19	2.8	18	85	11	68	27	29	0	43	1.55
693252--693301	17	2.7	19	87	9	68	28	28	0	44	1.55
693396--693427	2	16.0	2	100	0	64	50	0	0	50	1.00
693463--693552	15	6.3	13	71	20	56	43	4	6	45	1.50
693537--693570	18	1.9	18	94	5	61	47	0	5	47	1.26
712197--712222	13	2.0	13	100	0	52	38	0	30	30	1.58
716581--716657	28	2.6	30	83	8	104	50	7	2	38	1.45
716541--716665	28	4.6	28	67	16	84	48	8	1	41	1.42
716610--716668	2	31.0	2	76	10	61	52	3	1	42	1.28
716718--716746	15	2.0	15	93	6	51	75	0	0	24	0.80
717010--717075	29	2.3	29	92	2	107	40	12	10	36	1.77
717463--717740	134	2.1	131	88	4	407	47	4	12	35	1.63
718807--718921	51	2.3	51	85	8	146	33	7	10	47	1.67
719813--719868	20	2.8	20	97	0	103	35	17	17	28	1.93
722717--722759	21	2.0	21	100	0	86	48	9	23	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
723626--723676	13	3.9	13	84	0	66	33	17	21	27	1.96
724978--725021	15	2.9	15	86	6	54	63	0	27	9	1.24
729827--729852	2	13.0	2	100	0	52	50	0	0	50	1.00
742015--742078	20	3.2	20	86	0	92	31	17	15	35	1.91
742015--742092	40	2.0	39	89	2	120	33	17	12	35	1.88
744545--744569	11	2.3	11	100	0	50	84	0	0	16	0.63
745299--745331	16	2.1	16	94	0	57	54	24	15	6	1.63
745365--745442	10	7.6	10	77	9	77	64	20	5	10	1.44
745699--745726	14	2.0	14	100	0	56	64	14	7	14	1.48
748383--748459	14	5.8	14	74	18	51	23	0	7	68	1.15
748384--748463	38	2.0	40	92	7	137	25	0	10	65	1.24
749871--749909	20	2.0	20	90	5	62	38	2	0	58	1.12
759721--759797	30	2.5	31	87	4	111	35	14	25	24	1.93
762314--762364	21	2.4	22	80	6	61	23	0	9	66	1.21
762690--762719	2	15.0	2	100	0	60	50	0	0	50	1.00
763001--763025	8	3.1	8	100	0	50	16	24	24	36	1.94
763806--763870	30	2.2	30	83	5	78	9	26	26	38	1.86
780276--780330	27	2.0	27	100	0	110	27	7	36	29	1.84
794191--794247	14	4.0	14	82	8	62	38	0	0	61	0.96
794364--794462	25	4.0	25	94	3	166	36	20	15	28	1.92
801062--801086	11	2.3	11	100	0	50	28	0	0	72	0.86
801217--801268	21	2.5	21	93	3	88	32	3	9	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
804490--804538	13	3.8	13	74	15	57	63	12	2	22	1.39
804494--804554	25	2.4	25	100	0	122	62	14	3	19	1.46
806813--806882	12	5.6	12	71	25	56	65	1	0	32	1.01
806889--806933	10	4.5	10	82	0	54	35	0	33	31	1.58
807529--807606	2	39.0	2	100	0	156	50	0	0	50	1.00
808169--808206	15	2.6	15	87	4	51	26	2	2	68	1.16
812198--812244	24	2.0	24	88	8	71	38	6	23	31	1.80
818352--818420	33	2.1	33	83	5	86	15	30	24	28	1.96
818740--818813	33	2.2	33	85	0	94	16	31	25	27	1.96
822141--822219	22	3.7	22	86	6	110	21	18	34	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12