genome.fa.s7952.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007952.1 Hibiscus syriacus cultivar Beakdansim tig00110377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3169409

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  12  of  16  ( 1872 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2280520--2281037	105	5.0	105	80	7	506	33	25	20	20	1.97
2280627--2280992	203	1.8	203	94	0	651	33	25	21	19	1.97
2282837--2282870	2	17.5	2	93	6	61	50	0	0	50	1.00
2285488--2285529	20	2.1	20	86	0	57	35	33	11	19	1.88
2285528--2285601	19	3.9	19	80	1	78	22	32	16	28	1.96
2290234--2290271	17	2.2	17	100	0	76	47	5	5	42	1.48
2290347--2290377	13	2.5	12	90	10	53	38	19	16	25	1.92
2296621--2297065	225	2.0	228	93	2	763	45	8	7	39	1.62
2297130--2297175	20	2.3	19	89	10	74	54	10	17	17	1.70
2297297--2297344	21	2.3	20	80	13	62	54	10	16	18	1.70
2299643--2299708	33	2.0	33	87	0	96	28	1	45	24	1.62
2301488--2301535	18	2.6	19	86	6	71	31	2	10	56	1.45
2301683--2303167	197	7.5	198	97	1	2808	35	15	16	32	1.90
2304601--2304668	21	3.4	18	69	21	55	36	8	35	19	1.83
2304601--2304698	6	16.3	6	80	0	70	36	7	34	21	1.81
2304616--2304702	3	29.0	3	77	0	84	35	5	34	24	1.79
2304604--2304694	42	2.2	42	91	0	146	35	7	35	21	1.83
2304601--2304698	18	5.4	18	78	0	88	36	7	34	21	1.81
2306132--2306655	183	2.9	183	94	1	883	35	14	16	33	1.89
2309216--2309278	23	2.8	23	85	2	83	34	6	20	38	1.78
2309216--2309287	23	3.2	23	80	9	76	33	5	20	40	1.76
2309634--2309695	21	2.8	23	80	7	74	35	6	20	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2309656--2309704	23	2.1	23	88	7	73	34	2	20	42	1.64
2309640--2309709	21	3.2	21	75	15	61	32	5	21	40	1.77
2310054--2310117	23	2.8	23	78	0	74	37	6	18	37	1.76
2310054--2310126	23	3.2	23	75	7	67	35	5	19	39	1.75
2310478--2310541	23	2.8	23	87	0	92	35	6	20	37	1.78
2310478--2310550	23	3.2	23	82	7	85	34	5	20	39	1.76
2309119--2311628	423	5.9	427	94	3	4405	39	8	12	39	1.73
2310900--2310962	23	2.8	23	85	2	83	34	6	20	38	1.78
2310900--2310971	23	3.2	23	80	9	76	33	5	20	40	1.76
2311328--2311388	23	2.8	23	82	9	74	34	6	21	37	1.79
2311356--2311402	20	2.3	20	85	10	60	31	2	23	42	1.66
2311940--2311994	24	2.3	25	81	9	69	32	5	14	47	1.67
2311959--2311995	18	2.1	18	89	0	56	32	5	10	51	1.60
2312255--2312333	38	2.1	38	95	0	140	48	20	15	16	1.82
2312660--2312722	22	2.8	23	82	4	83	36	6	20	36	1.78
2312660--2312731	23	3.2	23	78	11	76	34	5	20	38	1.76
2314339--2314379	21	2.0	21	85	9	57	39	14	4	41	1.67
2315490--2315675	45	4.3	43	72	17	134	34	9	16	39	1.81
2315820--2316094	58	4.7	58	80	2	284	38	7	11	42	1.69
2315820--2316094	116	2.4	115	83	3	338	38	7	11	42	1.69
2316063--2316167	47	2.2	48	84	6	133	38	7	8	45	1.63
2316151--2316233	43	1.9	44	87	7	125	44	4	7	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2316302--2316392	39	2.3	39	90	0	146	37	5	6	50	1.52
2316433--2316538	53	2.0	52	82	14	128	32	8	12	47	1.71
2323314--2323423	50	2.2	50	86	3	150	17	36	26	20	1.94
2324556--2324666	50	2.2	50	88	0	159	20	29	35	14	1.92
2325627--2325752	2	63.0	2	100	0	252	50	0	50	0	1.00
2332620--2332665	23	2.0	24	86	4	67	47	2	0	50	1.13
2335293--2335334	18	2.4	18	88	7	61	73	0	7	19	1.05
2336136--2336238	53	2.0	52	82	5	127	58	10	4	26	1.52
2338167--2338252	21	4.1	21	89	0	127	38	10	23	27	1.87
2339790--2339846	10	5.5	10	75	8	51	5	12	1	80	0.95
2347814--2347843	15	2.0	15	100	0	60	6	20	33	40	1.78
2349717--2349821	37	2.8	37	80	0	120	40	14	12	32	1.83
2350238--2350284	22	2.0	24	88	8	71	25	2	0	72	0.96
2350533--2350571	16	2.4	17	91	8	64	25	0	0	74	0.82
2355343--2355387	23	1.9	23	81	4	54	77	8	6	6	1.11
2356191--2356253	24	2.8	21	77	13	63	33	11	6	49	1.64
2356972--2358136	106	11.0	106	92	0	1866	33	25	18	22	1.96
2358885--2358989	37	2.8	37	82	0	129	40	14	13	32	1.84
2359447--2359511	2	32.5	2	90	6	105	46	1	1	50	1.20
2359608--2359649	22	2.0	21	81	13	50	26	2	4	66	1.23
2359681--2359713	15	2.1	16	88	5	50	33	6	0	60	1.21
2359829--2359898	27	2.6	27	78	13	72	21	7	2	68	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2363948--2363975	13	2.2	13	100	0	56	28	21	0	50	1.49
2364796--2364961	61	2.7	62	78	14	164	46	6	7	39	1.58
2364858--2365001	64	2.3	64	85	8	190	41	6	9	42	1.63
2365681--2366117	216	2.0	217	99	0	867	34	15	12	37	1.86
2366648--2366782	71	1.9	70	89	5	211	48	6	11	33	1.65
2366904--2366956	23	2.4	22	76	17	56	43	1	13	41	1.54
2366947--2367020	35	2.2	33	82	4	85	44	6	4	44	1.49
2367040--2367099	2	31.0	2	93	6	106	51	0	0	48	1.00
2367137--2367229	38	2.4	38	76	13	100	46	7	4	41	1.52
2367281--2367311	14	2.2	14	94	0	53	45	3	9	41	1.53
2367294--2367417	20	6.6	19	67	16	71	45	3	11	39	1.56
2367292--2367337	10	4.4	10	84	10	65	50	0	8	41	1.33
2367281--2367376	26	3.5	27	76	18	83	48	3	8	39	1.49
2367365--2367450	37	2.3	38	82	11	108	44	4	11	39	1.62
2368805--2368889	2	45.0	2	88	11	135	50	0	0	49	1.00
2369164--2369320	79	2.0	79	89	2	244	43	8	5	42	1.56
2369346--2369378	16	2.1	16	88	5	50	42	6	12	39	1.67
2371102--2371136	17	1.9	19	88	11	56	62	0	2	34	1.10
2372446--2372504	29	2.0	30	81	12	70	57	3	5	33	1.37
2375727--2375807	32	2.6	30	84	9	110	32	20	20	25	1.98
2375750--2375811	32	1.9	32	96	0	115	30	20	22	25	1.98
2380707--2380792	32	2.8	32	87	3	122	30	18	22	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2382911--2382950	16	2.5	16	84	8	55	22	0	7	70	1.12
2383545--2383708	80	2.0	80	92	0	274	36	6	6	50	1.54
2389686--2389805	60	2.0	60	85	0	159	25	24	24	26	2.00
2392388--2393224	419	2.0	419	100	0	1674	28	12	18	39	1.88
2397120--2397158	16	2.4	16	95	0	69	20	23	12	43	1.86
2397131--2397169	16	2.4	16	86	0	51	25	17	15	41	1.89
2397565--2397613	8	5.8	8	77	13	53	79	2	4	14	0.97
2399874--2399995	43	2.8	43	87	2	183	23	18	27	31	1.97
2403578--2403638	23	2.8	21	79	15	70	21	22	32	22	1.98
2409543--2409722	88	2.0	88	87	2	254	30	20	15	34	1.93
2413368--2413436	18	3.8	18	77	7	59	71	1	4	23	1.12
2413446--2413511	21	3.0	22	73	16	57	59	1	9	30	1.38
2414581--2414642	2	31.5	2	96	3	117	50	0	0	50	1.00
2426094--2426153	23	2.7	23	76	10	70	45	0	8	46	1.33
2430847--2431033	69	2.7	69	82	0	203	27	32	10	29	1.90
2439709--2439850	59	2.4	58	87	3	205	38	21	19	21	1.93
2440794--2441419	313	2.0	313	99	0	1243	33	25	18	23	1.97
2441561--2441735	96	1.8	96	82	0	224	44	16	13	26	1.84
2443381--2443457	31	2.4	34	75	18	85	25	9	0	64	1.22
2446261--2446315	6	9.0	6	76	4	56	16	3	3	76	1.07
2446270--2446317	25	1.9	25	86	0	69	14	6	4	75	1.16
2446490--2446548	28	2.1	28	96	0	109	37	13	23	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2446490--2446555	28	2.4	28	92	0	96	37	13	22	25	1.91
2446668--2446744	35	2.2	35	88	0	109	51	9	12	25	1.69
2448593--2448726	70	1.9	70	89	8	211	26	2	11	58	1.48
2448717--2448762	21	2.1	23	84	8	60	23	4	10	60	1.47
2449421--2449474	20	2.7	20	85	5	74	18	11	0	70	1.16
2449436--2449476	14	2.9	14	85	7	57	17	9	0	73	1.09
2453908--2453934	12	2.2	12	100	0	54	44	0	14	40	1.46
2454014--2454059	23	2.0	23	100	0	92	13	30	4	52	1.59
2469317--2469426	50	2.2	50	88	0	166	16	35	29	19	1.93
2469559--2469599	10	4.1	10	84	12	57	31	26	0	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16