genome.fa.s7952.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007952.1 Hibiscus syriacus cultivar Beakdansim tig00110377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3169409

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1872 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2967886--2967954	12	5.7	11	70	23	50	60	1	1	36	1.14
2984173--2984626	182	2.5	182	92	0	748	27	16	13	42	1.85
2984535--2984586	20	2.6	20	78	0	68	13	15	15	55	1.69
2984499--2985073	112	5.1	112	96	0	997	24	15	15	44	1.85
2991027--2991078	2	26.0	2	100	0	104	50	0	0	50	1.00
2992806--2992872	32	2.1	32	100	0	134	38	14	11	34	1.84
2995218--2995372	23	7.0	22	83	5	161	34	23	22	18	1.96
2995566--2995609	23	1.9	23	86	9	63	34	11	9	45	1.72
2997847--2997966	24	5.0	24	80	9	127	18	20	18	43	1.88
2997847--2997966	48	2.5	48	84	5	152	18	20	18	43	1.88
2999060--2999152	31	3.0	31	90	0	141	43	11	9	35	1.74
3003681--3003715	4	8.5	4	87	6	52	0	28	0	71	0.86
3003661--3003715	21	2.4	23	85	8	69	0	29	1	69	0.99
3003684--3003723	21	1.9	21	84	0	53	2	32	2	62	1.22
3017588--3017632	22	2.0	22	100	0	90	22	4	15	57	1.56
3026379--3026747	191	1.9	191	92	2	616	37	11	15	35	1.84
3030308--3030345	20	1.9	20	88	0	58	13	26	36	23	1.91
3038751--3038782	12	2.7	12	95	0	55	28	15	18	37	1.92
3041012--3041060	18	2.6	19	83	6	64	28	16	24	30	1.96
3053883--3053963	3	27.3	3	94	2	146	67	0	32	0	0.91
3054025--3054152	3	41.7	3	90	4	202	63	0	32	3	1.13
3053813--3054096	142	2.0	142	98	0	550	51	6	27	14	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059624--3059748	37	3.5	35	65	18	89	46	12	13	28	1.79
3059528--3059763	68	3.5	68	82	8	340	48	10	12	27	1.74
3059909--3059962	21	2.6	21	96	0	99	29	25	24	20	1.99
3059995--3060051	21	2.8	20	75	15	53	26	19	22	31	1.98
3060140--3060166	6	4.5	6	100	0	54	33	51	14	0	1.43
3061183--3061259	34	2.2	35	93	2	129	40	12	10	36	1.78
3065345--3065394	25	2.0	25	96	0	91	52	10	12	26	1.70
3069999--3070031	16	2.0	17	94	5	59	84	3	6	6	0.84
3070726--3070775	12	4.3	12	75	10	50	20	20	18	42	1.90
3070722--3070776	22	2.4	22	84	6	74	21	20	16	41	1.90
3072922--3072991	2	37.5	2	84	13	96	51	0	0	48	1.00
3074116--3074162	21	2.2	21	84	0	58	21	0	6	72	1.07
3086252--3086628	82	4.5	82	84	4	461	34	15	15	35	1.89
3086251--3086629	164	2.3	165	87	5	532	34	15	15	35	1.89
3095872--3095964	41	2.3	41	100	0	186	16	11	20	51	1.75
3095971--3096041	24	3.0	24	81	4	81	25	15	14	45	1.84
3096007--3096091	35	2.4	35	90	2	125	25	16	17	40	1.90
3096094--3096144	24	2.2	23	89	3	75	15	15	23	45	1.85
3096047--3096179	70	1.9	69	82	1	167	20	15	22	41	1.90
3096153--3096215	22	2.8	23	80	7	67	12	11	22	53	1.69
3096395--3096444	26	1.9	26	95	0	91	42	12	16	30	1.84
3096462--3096562	40	2.5	40	91	1	157	24	6	12	55	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3098871--3098908	10	3.9	10	93	3	60	15	42	31	10	1.81
3098872--3098925	10	5.5	10	84	8	58	18	40	27	12	1.87
3098872--3098916	19	2.3	20	88	3	65	15	42	28	13	1.85
3110999--3111034	15	2.4	15	90	0	54	22	16	0	61	1.35
3121298--3121599	55	5.5	55	86	5	396	31	25	16	26	1.97
3121298--3121599	111	2.7	110	86	6	407	31	25	16	26	1.97
3121621--3121692	37	2.0	36	91	2	117	22	22	19	36	1.95
3122960--3122990	14	2.2	14	94	0	53	3	12	3	80	0.95
3122974--3123126	41	3.7	40	72	14	123	7	17	1	73	1.12
3123054--3123095	14	2.9	14	83	16	59	4	21	0	73	1.01
3132808--3132896	45	1.9	47	88	4	137	39	22	10	28	1.86
3137444--3137476	13	2.5	13	90	0	57	15	6	0	78	0.93
3137424--3137476	26	2.0	27	81	3	63	22	3	1	71	1.12
3138586--3138637	19	2.7	20	80	11	63	71	0	9	19	1.13
3138707--3138764	8	7.2	8	90	5	64	56	0	0	43	0.99
3138709--3138757	2	24.5	2	95	0	89	53	0	0	46	1.00
3139170--3139271	37	2.8	37	87	0	132	31	12	14	41	1.84
3139991--3141028	106	9.9	106	89	2	1509	23	18	24	33	1.96
3142599--3142680	20	4.3	19	80	10	78	1	13	4	80	0.93
3142621--3142665	18	2.6	18	89	3	65	0	13	2	84	0.72
3142621--3142681	8	7.2	8	79	17	70	0	14	3	81	0.80
3142613--3142671	29	2.0	31	90	6	95	0	15	5	79	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3147302--3147353	19	2.7	20	80	11	63	71	0	9	19	1.13
3147429--3147461	2	16.5	2	100	0	66	51	0	0	48	1.00
3147871--3147972	37	2.8	37	87	0	132	30	14	13	41	1.85
3153826--3153882	28	2.0	28	93	0	96	28	14	29	28	1.95
3154526--3154564	20	2.0	20	100	0	78	41	7	15	35	1.76
3166382--3166420	2	19.5	2	100	0	78	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!